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View Structure Prediction Details

Protein: RGA_ARATH
Organism: Arabidopsis thaliana
Length: 587 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGA_ARATH.

Description E-value Query
Range
Subject
Range
gi|2339978 - gi|2339978|emb|CAA72177.1| RGA1 protein [Arabidopsis thaliana]
828.0 [0..1] [587..1]

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Predicted Domain #1
Region A:
Residues: [1-90]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA  60
   61 EVALKLEQLE TMMSNVQEDG LSHLATDTVH 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [91-234]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YNPSELYSWL DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP  60
   61 AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT AAGESTRSVI 120
  121 LVDSQENGVR LVHALMACAE AIQQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [235-395]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNLTLAEALV KQIGCLAVSQ AGAMRKVATY FAEALARRIY RLSPPQNQID HCLSDTLQMH  60
   61 FYETCPYLKF AHFTANQAIL EAFEGKKRVH VIDFSMNQGL QWPALMQALA LREGGPPTFR 120
  121 LTGIGPPAPD NSDHLHEVGC KLAQLAEAIH VEFEYRGFVA N

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [396-587]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLADLDASML ELRPSDTEAV AVNSVFELHK LLGRPGGIEK VLGVVKQIKP VIFTVVEQES  60
   61 NHNGPVFLDR FTESLHYYST LFDSLEGVPN SQDKVMSEVY LGKQICNLVA CEGPDRVERH 120
  121 ETLSQWGNRF GSSGLAPAHL GSNAFKQASM LLSVFNSGQG YRVEESNGCL MLGWHTRPLI 180
  181 TTSAWKLSTA AY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle