YRC Public Data Repository - Protein Structure Prediction

Protein:	THIC_ARATH
Organism:	Arabidopsis thaliana
Length:	644 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for THIC_ARATH.

Description	E-value	Query Range	Subject Range
gi\|12240033 - gi\|12240033\|gb\|AAG49550.1\|AF264021_1 putative thiamine biosythesis protein ThiC [Poa secunda]	1112.0	[0..3]	[640..2]
gi\|115454593, gi... - gi\|215767700\|dbj\|BAG99928.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|215697043\|dbj...	1094.0	[0..3]	[638..2]
THIC_PSEA7 - Phosphomethylpyrimidine synthase OS=Pseudomonas aeruginosa (strain PA7) GN=thiC PE=3 SV=1	1016.0	[0..79]	[623..10]
THIC_PSEAB - Phosphomethylpyrimidine synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=thiC PE=3 SV=1	1015.0	[0..79]	[623..10]
THIC_PSEAE - Phosphomethylpyrimidine synthase OS=Pseudomonas aeruginosa GN=thiC PE=3 SV=1 gi\|107104072 - gi\|107104072\|ref\|ZP_01367990.1\| hypothetical protein PaerPA_01005145 [Pseudomonas aeruginosa PACS2] gi\|254238313, gi... - gi\|84317584\|ref\|ZP_00966023.1\| COG0422: Thiamine biosynthesis protein ThiC [Pseudomonas aeruginosa C... gi\|84323683, gi\|... - gi\|84323683\|ref\|ZP_00971751.1\| COG0422: Thiamine biosynthesis protein ThiC [Pseudomonas aeruginosa 2... THIC_PSEA8 - Phosphomethylpyrimidine synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=thiC PE=3 SV=1 THIC_PSEAE - Phosphomethylpyrimidine synthase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 ...	1015.0	[0..79]	[623..10]
gi\|120553736, gi... - gi\|77954565\|ref\|ZP_00818957.1\| Thiamine biosynthesis protein ThiC [Marinobacter aquaeolei VT8], gi\|7...	1014.0	[0..27]	[623..2]
gi\|91776880, gi\|... - gi\|91776880\|ref\|YP_546636.1\| thiamine biosynthesis protein ThiC [Methylobacillus flagellatus KT], gi...	1012.0	[0..67]	[623..2]
THIC_SACD2 - Phosphomethylpyrimidine synthase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) ...	1011.0	[0..69]	[623..6]
gi\|238721292, gi... - gi\|77972242\|ref\|ZP_00827814.1\| COG0422: Thiamine biosynthesis protein ThiC [Yersinia frederiksenii A...	1010.0	[0..59]	[622..6]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASVHCTLM SVVCNNKNHS ARPKLPNSSL LPGFDVVVQA AATRFKKETT TTRATLTFDP  60
   61 PTTNSERAKQ RKHTIDPSSP DFQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [84-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIPSFEECFP KSTKEHKEVV HEESGHVLKV PFRRVHLSGG EPAFDNYDTS GPQNVNAHIG  60
   61 LAKLRKEWID RREKLGTPRY TQMYYAKQGI ITEEMLYCAT REKLDPEFVR SEVARGRAII 120
  121 PSNKKHLE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [212-453]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEPMIVGRKF LVKVNANIGN SAVASSIEEE VYKVQWATMW GADTIMDLST GRHIHETREW  60
   61 ILRNSAVPVG TVPIYQALEK VDGIAENLNW EVFRETLIEQ AEQGVDYFTI HAGVLLRYIP 120
  121 LTAKRLTGIV SRGGSIHAKW CLAYHKENFA YEHWDDILDI CNQYDVALSI GDGLRPGSIY 180
  181 DANDTAQFAE LLTQGELTRR AWEKDVQVMN EGPGHVPMHK IPENMQKQLE WCNEAPFYTL 240
  241 GP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [454-644]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTTDIAPGYD HITSAIGAAN IGALGTALLC YVTPKEHLGL PNRDDVKAGV IAYKIAAHAA  60
   61 DLAKQHPHAQ AWDDALSKAR FEFRWMDQFA LSLDPMTAMS FHDETLPADG AKVAHFCSMC 120
  121 GPKFCSMKIT EDIRKYAEEN GYGSAEEAIR QGMDAMSEEF NIAKKTISGE QHGEVGGEIY 180
  181 LPESYVKAAQ K

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits