YRC Public Data Repository - Protein Structure Prediction

Protein:	RLA25_ARATH
Organism:	Arabidopsis thaliana
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLA25_ARATH.

Description	E-value	Query Range	Subject Range
gi\|39582094, gi\|... - gi\|39582094\|emb\|CAE63737.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae], gi\|187032828\|em... gi\|157747115 - gi\|157747115\|ref\|XP_001668652.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae AF16]	114.0	[0..1]	[114..1]
RLA2_BRUMA - 60S acidic ribosomal protein P2 OS=Brugia malayi GN=rpp-2 PE=3 SV=1	112.0	[0..1]	[114..2]
gi\|110765226, gi... - ref\|XP_392860.1\| similar to 60S acidic ribosomal protein P2 [Apis mellifera], gi\|110765226\|ref\|XP_00...	109.0	[0..1]	[114..1]
gi\|77416939 - gi\|77416939\|gb\|ABA81865.1\| unknown [Solanum tuberosum]	108.0	[0..1]	[72..1]
gi\|56758742 - gi\|56758742\|gb\|AAW27511.1\| unknown [Schistosoma japonicum]	107.0	[0..1]	[114..1]
gi\|50800573 - gi\|50800573\|ref\|XP_424134.1\| PREDICTED: hypothetical protein [Gallus gallus]	103.0	[0..1]	[114..1]

Back

Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVVAAYLLA KLSGNENPSV ADLKKIVESV GAEIDQEKID LFFSLIKDRD VTELIAVGRE  60
   61 KMAALSSGGG AVAVASGGGG GAAPAAEPAS VESKKKEEEK EESEDDGGMM SLFD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	17.0
Match:	PF00428.10
Description:	No description for PF00428.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits