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View Structure Prediction Details

Protein: RLA25_ARATH
Organism: Arabidopsis thaliana
Length: 114 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLA25_ARATH.

Description E-value Query
Range
Subject
Range
gi|39582094, gi|... - gi|39582094|emb|CAE63737.1| Hypothetical protein CBG08266 [Caenorhabditis briggsae], gi|187032828|em...
gi|157747115 - gi|157747115|ref|XP_001668652.1| Hypothetical protein CBG08266 [Caenorhabditis briggsae AF16]
114.0 [0..1] [114..1]
RLA2_BRUMA - 60S acidic ribosomal protein P2 OS=Brugia malayi GN=rpp-2 PE=3 SV=1
112.0 [0..1] [114..2]
gi|110765226, gi... - ref|XP_392860.1| similar to 60S acidic ribosomal protein P2 [Apis mellifera], gi|110765226|ref|XP_00...
109.0 [0..1] [114..1]
gi|77416939 - gi|77416939|gb|ABA81865.1| unknown [Solanum tuberosum]
108.0 [0..1] [72..1]
gi|56758742 - gi|56758742|gb|AAW27511.1| unknown [Schistosoma japonicum]
107.0 [0..1] [114..1]
gi|50800573 - gi|50800573|ref|XP_424134.1| PREDICTED: hypothetical protein [Gallus gallus]
103.0 [0..1] [114..1]

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Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVVAAYLLA KLSGNENPSV ADLKKIVESV GAEIDQEKID LFFSLIKDRD VTELIAVGRE  60
   61 KMAALSSGGG AVAVASGGGG GAAPAAEPAS VESKKKEEEK EESEDDGGMM SLFD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 17.0
Match: PF00428.10
Description: No description for PF00428.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.583 N/A N/A a.277.1 Description not found.
View Download 0.485 N/A N/A a.39.1 EF-hand
View Download 0.384 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.370 N/A N/A a.39.1 EF-hand
View Download 0.370 N/A N/A a.39.1 EF-hand
View Download 0.350 N/A N/A c.78.2 Aspartate/glutamate racemase
View Download 0.350 N/A N/A c.78.2 Aspartate/glutamate racemase
View Download 0.305 N/A N/A a.39.1 EF-hand
View Download 0.305 N/A N/A a.39.1 EF-hand
View Download 0.288 N/A N/A a.28.2 Colicin E immunity proteins
View Download 0.207 N/A N/A d.108.1 Acyl-CoA N-acyltransferases (Nat)


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle