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View Structure Prediction Details

Protein: gi|7485405, gi|1...
Organism: Arabidopsis thaliana
Length: 773 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7485405, gi|1....

Description E-value Query
Range
Subject
Range
gi|110743700, gi... - gi|186506600|ref|NP_001118476.1| unknown protein [Arabidopsis thaliana], gi|110743700|dbj|BAE99687.1...
336.0 [0..310] [773..1]
gi|34897354, gi|... - gi|34897354|ref|NP_910023.1| hypothetical protein [Oryza sativa], gi|15042816|gb|AAK82439.1|AC091247...
241.0 [0..330] [770..326]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTYLMVTLM LALAFYIGLN FIATPPPTSL NTLFDEYSRE PGEFAAGMEE GEDRPIDPIS  60
   61 DIDITRINDL MFNSNFRAAA 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 5.721246
Match: PF08510.3
Description: No description for PF08510.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [81-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DENSIVDLSS QVHQLPCCIR FDGPVEVSHY FKPKSSVRLM WKAVEFVDVE IDGVKTEEAH  60
   61 FRGRKLQGAT ISLPSGYSGF VLRQASNLNA NGKRKASMPT EDNQCWEVKA KFNNLTYWNH 120
  121 DSLPSKDDTF FRSFHWFSIA EAVTS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 61.004365
Match: PF08615.2
Description: No description for PF08615.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [226-288]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENKNLEERVK QSALTLHERE IRESEKREKE TRKTPRSSSR LEKAGHLLAD WRKRVILQIW  60
   61 IGE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [289-522]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFDDKDYFIS GYSRRVEVSK EMESKEIRSS SVFERSMRFN GLFQDKLRVV EKQNQPPKRF  60
   61 NQKESNSGFT VIPTKQLCRV YLQKPNLLAS KGIIDALAKP PHRIFGRRYD QQNFKSKLRH 120
  121 LHTTSIDPLK HKFGKEENSL RYFTPLGFSS GSRLGDRKKG KDLSFQEEKP KEMKKLCDQK 180
  181 KERVVREVKS SLVVSTSRDR VAADVKFRDL SSSGFISKDI NAESVDCSHG SPEC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [523-632]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTNSEDAHQP SPVSVLEPMF YEDNLDDSED ILDDSEDLPY PNFLSLENQL ETLKSESESY  60
   61 SDGSGMEVSS DEESALDSAI KESKESEPIG FLDTQESRDS SYIDDILAEV 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [633-773]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLGDKNCVPG KRDLVITPKI FEKLEKKYYT ETSWKRSDRK ILFDRVNSSL VEILESFSAT  60
   61 PTWKKPVSRR LGTALSTCGL KQELWKVLSR QEKRSKKKSL AKVPVIDIDE WLELEADDES 120
  121 VVCELESMIV DELLSEVVSF M

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle