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View Structure Prediction Details

Protein: MDLL_ARATH
Organism: Arabidopsis thaliana
Length: 552 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MDLL_ARATH.

Description E-value Query
Range
Subject
Range
gi|50754333 - gi|50754333|ref|XP_414335.1| PREDICTED: similar to choline dehydrogenase precursor [Gallus gallus]
493.0 [0..40] [548..44]

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Predicted Domain #1
Region A:
Residues: [1-552]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKRIDSSLL YTALVVLLLL GVVHRSNARP RVNRPPGFMR FISNATDFAS EDYYDYIIVG  60
   61 GGTAGCPLAA TLSQSFRVLL LERGGVPYNR PNVMSHDGFL TTLTDVNNFD SPAQSFISEE 120
  121 GVPNARGRVL GGSSAINAGF YSRADKQFFE NSGLVWDLSS VNQSYEWVER AIVFRPQLRT 180
  181 WQTAIRDALL EVGVHPFNGF TLEHKVGTKI GGSTFDRTGR RHSSADLLRY ARSSNIRVAV 240
  241 YATVERVLLA SSPSVSGSNV SAIGVVYRDQ LGRFHHALIR DRGEVILSAG ALGSPQLLFL 300
  301 SGIGPRSYLS TWGIPVALDQ PHVGDFVYDN PRNGISIVPP VPMENSLIQV VGVTEDGAFL 360
  361 EAASNVIPFA SPLHSVFIRA PASPLYVPVT TIMEKILGPV SIGLLRLAST DVRINPVVRF 420
  421 NYFSDPQDLE RCVNGTRKIG EILRSRAMQD FMIREWFGNR RFRFVGAPLP VDQSNDLVMA 480
  481 DFCRRTVSTI WHYHGGAVVG KVVDSDLKVI GVNSLRLVDG STFNISPGTN PQATLMMLGR 540
  541 YMGLKMLRER MR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 110.0
Match: 1ju2A
Description: Hydroxynitrile lyase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
NADPH-adrenodoxin reductase activity 1.66322258278059 bayes_pls_golite062009
glucose dehydrogenase activity 1.30840878956762 bayes_pls_golite062009
catalytic activity 1.03127962968326 bayes_pls_golite062009
oxidoreductase activity 0.943208146517927 bayes_pls_golite062009
binding 0.640133306613855 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors 0.397770205910041 bayes_pls_golite062009
protein binding 0.370064403093958 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle