| Protein: | NCBP1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 848 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NCBP1_ARATH.
| Description | E-value | Query Range |
Subject Range |
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1232.0 | [0..1] | [848..1] |
|
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1081.0 | [0..2] | [846..3] |
|
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937.0 | [0..1] | [848..1] |
|
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880.0 | [0..5] | [760..35] |
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871.0 | [0..5] | [760..35] |
|
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866.0 | [0..5] | [756..153] |
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864.0 | [0..5] | [760..35] |
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856.0 | [0..5] | [756..45] |
|
Region A: Residues: [1-756] |
1 11 21 31 41 51
| | | | | |
1 MSNWKTLLLR IGEKGPEYGT SSDYKDHIET CFGVIRREIE RSGDQVLPFL LQCAEQLPHK 60
61 IPLYGTLIGL LNLENEDFVQ KLVESVHANF QVALDSGNCN SIRILLRFMT SLLCSKVIQP 120
121 ASLIVVFETL LSSAATTVDE EKGNPSWQPQ ADFYVICILS SLPWGGSELA EQVPDEIERV 180
181 LVGIQAYLSI RKNSSTSGLN FFHNGEFESS LAEKDFVEDL LDRIQSLASN GWKLESVPRP 240
241 HLSFEAQLVA GKFHELRPIK CMEQPSPPSD HSRAYSGKQK HDALTRYPQR IRRLNIFPAN 300
301 KMEDVQPIDR FVVEEYLLDV LFYLNGCRKE CASYMANLPV TFRYEYLMAE TLFSQILLLP 360
361 QPPFKTLYYT LVIMDLCKAL PGAFPAVVAG AVRALFEKIS DLDMESRTRL ILWFSHHLSN 420
421 FQFIWPWEEW AFVLDLPKWA PKRVFVQEIL QREVRLSYWD KIKQSIENAT ALEELLPPKA 480
481 GPNFMYSLEE GKEKTEEQQL SAELSRKVKE KQTARDMIVW IEETIYPVHG FEVTLTIVVQ 540
541 TLLDIGSKSF THLVTVLERY GQVFSKLCPD NDKQVMLLSQ VSTYWKNNVQ MTAVAIDRMM 600
601 GYRLVSNQAI VRWVFSPENV DQFHVSDQPW EILGNALNKT YNRISDLRKD ISNITKNVLV 660
661 AEKASANARV ELEAAESKLS LVEGEPVLGE NPAKMKRLKS TVEKTGEAEL SLRESLEAKE 720
721 ALLNRALSET EVLLLLLFQS FLGVLKERLP DPTKVR
|
| Detection Method: |  |
| Confidence: | 1000.0 |
| Match: | 1n52A |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [757-848] |
1 11 21 31 41 51
| | | | | |
1 SVQDLKSIGA EDDKPSAMDV DSENGNPKKS CEVGEREQWC LSTLGYLTAF TRQYASEIWP 60
61 HMEKLESEVF SGEDVHPLFL QAISSALQFP LH
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.904 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.823 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.785 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.733 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.717 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.636 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.611 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.526 | a.1.1 | Globin-like |
| View | Download | 0.521 | a.39.1 | EF-hand |
| View | Download | 0.479 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.243 | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.235 | a.1.1 | Globin-like |
| View | Download | 0.221 | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.204 | d.34.1 | DNA-binding domain of Mlu1-box binding protein MBP1 |
