YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21593084, gi\|...
Organism:	Arabidopsis thaliana
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21593084, gi|....

Description	E-value	Query Range	Subject Range
gi\|76795471, gi\|... - gi\|76795471\|ref\|ZP_00777844.1\| 5-carboxymethyl-2-hydroxymuconate delta-isomerase [Thermoanaerobacter... gi\|241885014, gi... - gi\|241902552\|ref\|ZP_04787285.1\| 5-carboxymethyl-2-hydroxymuconate Delta-isomerase [Thermoanaerobacte... gi\|166853110, gi... - gi\|167038870\|ref\|YP_001661855.1\| 5-carboxymethyl-2-hydroxymuconate Delta-isomerase [Thermoanaerobact... gi\|242256983, gi... - gi\|242256983\|ref\|ZP_04801862.1\| 5-carboxymethyl-2-hydroxymuconate Delta-isomerase [Thermoanaerobacte...	273.0	[0..1]	[215..34]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSMIQRLF KQGTKIVGVG LNYASHAKEL GNALPKDPIV FLKPTSSYLE NGGTIEIPHP  60
   61 LDSLHHEVEL AVVIGQKARD VPERLAMNYI GGYALALDMT ARELQVSAMA SGLPCTLAKG 120
  121 QDTFTPISSV LPKAMVLDPN NLELWLKVDD ETRQKGWTKD MIFKVPYLIS YISSVMTLFK 180
  181 GDVILTGTPE GIGPVKIGQK ITAGITGLSE VQFDVGRRLK PLLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.045757
Match:	1sawA
Description:	X-ray structure of homo sapiens protein FLJ36880
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity, acting on acid carbon-carbon bonds	3.47506644461251	bayes_pls_golite062009
hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances	3.3661586952187	bayes_pls_golite062009
catalytic activity	1.43840931606572	bayes_pls_golite062009
binding	0.917289226788792	bayes_pls_golite062009
protein binding	0.334167038998597	bayes_pls_golite062009
hydrolase activity	0.145057589038159	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: