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View Structure Prediction Details

Protein: FAB1C_ARATH
Organism: Arabidopsis thaliana
Length: 1648 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for FAB1C_ARATH.

Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIPDGSLLD LIDKVRSWIT SDSSDSLFLL SSSKQDFGIM PIVSKMCHDC GTKVEQGYCC  60
   61 LSCGSCWCKS CSDTEESKMK LCRECDAEVR ELRVKSY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.522879
Match: 1dvpA
Description: Hrs
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [98-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKVHPRDSPD PPSSLATESE SLASSLEIRD CRNMASIRCY PSRGEEEEAR YCGKQLLSPS  60
   61 SDNYQDSSDI ESGSVSARHE LFSCKSSAGS SPHDSPLRNN FSPLGRFVQH A

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [209-722]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDLRSPTVCS FDNHQEQLLA DNLVKPGQGV LEQEDHEEEE DKLQQPLDFE NNGRIWYPPP  60
   61 PEDENDDAES NYFHYDDEDD DIGDSATEFS LSSSFSSHIP TKEKLGENSN EPLRTVVHDH 120
  121 FRALVAELLR GEELSPSDDG SAGEWLDIVT ALAWQAANFV KPDTRAGGSM DPGNYVKIKC 180
  181 VASGNQNESI LIRGIVCSKN ITHKRMISQY KNPRVMLLAG SLEYQRVAGQ LASFNTLLQQ 240
  241 ENEHMKAIIA KIESLRPNVL LVEKSASSYA QQYLLEKEIS LVLNVKRSLL DRIARCTGAV 300
  301 LCPSLDSIST ARLGHCELFR TERVLEQHEA GNQSNRKPSR TLMYFEGCPR RLGCTVVLRG 360
  361 SCREELKKVK HVIQYAVFAA YHLSLETSFL ADEGASLPKI RLKQPGMVRT ASQRRIIDEG 420
  421 ISLITQSPTE TDSQALLETA AHEDEHTAPM PEHEVCESLC EDFDPTQIFP PSSEVETEQS 480
  481 DTLNGDFANN LVTRSYSSNQ LNDLHEPTLC LSSE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 119.0
Match: 1q3sA
Description: Crystal structure of the chaperonin from Thermococcus strain KS-1 (FormIII crystal complexed with ADP)
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [723-787]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPETPTQQPS GEEDNGRGEE ENQLVNPQDL PQHESFYEDD VSSEYFSAAD SHQSILVSFS  60
   61 SRCVL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [788-883]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KESVCERSRL LRIKFYGSFD KPLGRYLKDD LFDKTSSCRS CKELVDAHVL CYSHQNGNLT  60
   61 INVRRLPSMK LPGEQDGKIW MWHRCLRCAH VDGVPP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [884-1081]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATRRVVMSDA AWGLSFGKFL ELSFSNHATA NRVASCGHSL QRDCLRFYGF GNMVAFFRYS  60
   61 PINILTVLLP PSMLEFNSHP QQEWIRTEAA ELVGKMRTMY TEISDMLNRM EEKSSLLEPE 120
  121 QSEACDLHSR IIGLIDQLVK EKDEYDDALQ PIFEENLQIQ GSLDILELNR LRRALMIGAH 180
  181 AWDHQLYLLN SQLKKASV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [1082-1307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FKTGDDNAPR NPEMHDPPKI DRRMQEGSDE RDEQSHTDSE ANGDNKDPEN IPSPGTSLSE  60
   61 RIDSAWLGSF QNLEKAETIA ETEGFSAVNS SLRRLARPIR VQSFDSAIRF QERIQKGLPP 120
  121 SSLYLSTLRS FHASGEYRNM VRDPVSNVMR TYSQMLPLEV QKLDLIVGSA PTYISSASQM 180
  181 ADGARMLIPQ RGLNDIVVPV YDDDPASVVS YAINSKEYKE WIVNKG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1308-1648]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LASSSSSSNL NNRESEPSAF STWRSLSMDV DYIQHAVYGS SQDDRKSPHL TISFSDRASS  60
   61 SSTATEGKVK FSVTCYFATQ FDTLRKTCCP SEVDFVRSLS RCQRWSAQGG KSNVYFAKSL 120
  121 DERFIIKQVV KTELDSFEDF APEYFKYLKE SLSSGSPTCL AKILGIYQVS IKHPKGGKET 180
  181 KMDLMVMENL FYNRRISRIY DLKGSARSRY NPNTSGADKV LLDMNLLETL RTEPIFLGSK 240
  241 AKRSLERAIW NDTNFLASVD VMDYSLLVGF DEERKELVLG IIDFMRQYTW DKHLETWVKA 300
  301 SGILGGPKNA SPTIVSPKQY KRRFRKAMTT YFLTVPEPWT S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 77.30103
Match: 1bo1A
Description: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle