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View Structure Prediction Details

Protein: HDG12_ARATH
Organism: Arabidopsis thaliana
Length: 687 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HDG12_ARATH.

Description E-value Query
Range
Subject
Range
gi|109729920 - gi|109729920|tpg|DAA05774.1| TPA: TPA_inf: class IV HD-Zip protein HDZ44 [Selaginella moellendorffii...
788.0 [0..2] [684..85]
gi|19070143 - gi|19070143|gb|AAL83725.1|AF328842_1 homeodomain protein HB2 [Picea abies]
782.0 [0..4] [686..9]
gi|109729922 - gi|109729922|tpg|DAA05775.1| TPA: TPA_inf: class IV HD-Zip protein HDZ41 [Physcomitrella patens]
781.0 [0..3] [681..94]
gi|7267248, gi|2... - gi|7267248|emb|CAB81031.1| putative homeotic protein [Arabidopsis thaliana], pir||E85061 probable ho...
770.0 [0..6] [686..42]
gi|8920427, gi|1... - gi|8920427|emb|CAB96425.1| OCL5 protein [Zea mays], gi|162462636|ref|NP_001105127.1| OCL5 protein [Z...
767.0 [0..3] [686..85]

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Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL  60
   61 APRQIKFWFQ 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.69897
Match: 1fjlA
Description: Paired protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [71-193]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRRTQKKAQH ERADNCALKE ENDKIRCENI AIREAIKHAI CPSCGDSPVN EDSYFDEQKL  60
   61 RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS 120
  121 SMS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.348 c.26.2 Adenine nucleotide alpha hydrolases-like
View Download 0.346 a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.342 a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.338 a.13.1 alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View Download 0.295 a.7.4 Smac/diablo
View Download 0.295 a.7.4 Smac/diablo
View Download 0.260 a.25.1 Ferritin-like
View Download 0.259 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.258 a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.253 a.25.1 Ferritin-like

Predicted Domain #3
Region A:
Residues: [194-449]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPSLPSQPNL VLSEMDKSLM TNIAVTAMEE LLRLLQTNEP LWIKTDGCRD VLNLENYENM  60
   61 FTRSSTSGGK KNNLGMEASR SSGVVFTNAI TLVDMLMNSV KLTELFPSIV ASSKTLAVIS 120
  121 SGLRGNHGDA LHLMIEELQV LSPLVTTREF CVLRYCQQIE HGTWAIVNVS YEFPQFISQS 180
  181 RSYRFPSGCL IQDMSNGYSK VTWVEHGEFE EQEPIHEMFK DIVHKGLAFG AERWIATLQR 240
  241 MCERFTNLLE PATSSL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.79
Match: 2r55A
Description: No description for 2r55A was found.

Predicted Domain #4
Region A:
Residues: [450-572]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLGGVIPSPE GKRSIMRLAH RMVSNFCLSV GTSNNTRSTV VSGLDEFGIR VTSHKSRHEP  60
   61 NGMVLCAATS FWLPISPQNV FNFLKDERTR PQWDVLSNGN SVQEVAHITN GSNPGNCISV 120
  121 LRG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.726 d.326.1 Description not found.
View Download 0.686 d.32.1 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
View Download 0.537 d.110.4 SNARE-like
View Download 0.534 d.82.2 Frataxin-like
View Download 0.534 d.32.1 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
View Download 0.534 d.32.1 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
View Download 0.534 b.97.1 Anemone pore-forming cytolysin
View Download 0.482 d.32.1 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
View Download 0.446 b.29.1 Concanavalin A-like lectins/glucanases
View Download 0.434 d.82.2 Frataxin-like

Predicted Domain #5
Region A:
Residues: [573-687]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FNASSSQNNM LILQESCIDS SSAALVIYTP VDLPALNIAM SGQDTSYIPI LPSGFAISPD  60
   61 GSSKGGGSLI TVGFQIMVSG LQPAKLNMES METVNNLINT TVHQIKTTLN CPSTA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.597 N/A N/A f.21.2 Fumarate reductase respiratory complex transmembrane subunits
View Download 0.571 N/A N/A a.246.1 Description not found.
View Download 0.566 N/A N/A a.24.4 Hemerythrin
View Download 0.562 N/A N/A d.20.1 UBC-like
View Download 0.525 N/A N/A a.24.10 Histidine-containing phosphotransfer domain, HPT domain
View Download 0.509 N/A N/A a.7.7 BAG domain
View Download 0.456 N/A N/A a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.437 N/A N/A d.58.20 NAD-binding domain of HMG-CoA reductase
View Download 0.419 N/A N/A a.8.2 Plasmid maintenance system epsilon/zeta, antidote epsilon subunit


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle