| Protein: | Y3903_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 460 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y3903_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
414.0 | [0..4] | [459..13] |
|
|
407.0 | [0..1] | [421..1] |
|
|
365.0 | [0..9] | [451..7] |
|
|
359.0 | [0..9] | [451..5] |
|
Region A: Residues: [1-253] |
1 11 21 31 41 51
| | | | | |
1 MVVSDGGKRV KLNVGGEIFE TNASTIQSSC PDSLLAALST STSHGSNPVF IDRDPEIFAV 60
61 ILNLLRTGRL PANSSGVFSK QELLDEAMYY GVESLLRLAM LPPPLLGFDA SLVSTIVPAA 120
121 DGVPSALTAT AGDASLWIAH GGQISVYDWS LSHAGTVRTH LNDITSICRV WGEAAAIGSG 180
181 SASGLHFYDL SGGRYIGSTH WTDPEDPRIH KARVAAVADS EGGVFASFDC LHRENSVLQI 240
241 DKSTLQVAAV IGQ
|
| Detection Method: |  |
| Confidence: | 45.30103 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [254-374] |
1 11 21 31 41 51
| | | | | |
1 QSGNSAKTTV PEKLRWLPAK GLLVGSAVQR GVFGCSGYIR IWDPRSRNIV WETNEPGSGR 60
61 STRFGDALAD MDVDVEDSIL FKVCSKSGDL GMADIRKLGE DPWVYMSDEN PGAWKAGDGG 120
121 G
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.534 | N/A | N/A | b.64.1 | Mannose 6-phosphate receptor domain |
| View | Download | 0.448 | N/A | N/A | b.61.1 | Avidin/streptavidin |
| View | Download | 0.448 | N/A | N/A | b.61.1 | Avidin/streptavidin |
| View | Download | 0.444 | N/A | N/A | b.1.16 | Lamin A/C globular tail domain |
| View | Download | 0.444 | N/A | N/A | b.1.16 | Lamin A/C globular tail domain |
| View | Download | 0.410 | N/A | N/A | b.61.1 | Avidin/streptavidin |
| View | Download | 0.397 | N/A | N/A | b.1.18 | E set domains |
| View | Download | 0.379 | N/A | N/A | b.1.16 | Lamin A/C globular tail domain |
| View | Download | 0.323 | N/A | N/A | d.20.1 | UBC-like |
| View | Download | 0.269 | N/A | N/A | b.1.1 | Immunoglobulin |
| View | Download | 0.269 | N/A | N/A | b.7.1 | C2 domain (Calcium/lipid-binding domain, CaLB) |
| View | Download | 0.248 | N/A | N/A | b.13.3 | Description not found. |
| View | Download | 0.217 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.215 | N/A | N/A | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.214 | N/A | N/A | b.60.1 | Lipocalins |
|
Region A: Residues: [375-460] |
1 11 21 31 41 51
| | | | | |
1 YSVVHCYRKQ VLAARGGALE VWSSVKEKTS GDPIRRRNFV DKEDDSKRGM ISKIEAGGDR 60
61 LFVSRECMEG VEVWETSSFS GVVSVE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.664 | b.1.18 | E set domains |
| View | Download | 0.664 | b.1.18 | E set domains |
| View | Download | 0.646 | b.92.1 | Composite domain of metallo-dependent hydrolases |
| View | Download | 0.635 | b.61.2 | Metalloprotease inhibitor |
| View | Download | 0.635 | b.61.2 | Metalloprotease inhibitor |
| View | Download | 0.625 | b.1.1 | Immunoglobulin |
| View | Download | 0.617 | c.47.1 | Thioredoxin-like |
| View | Download | 0.569 | d.1.1 | Microbial ribonucleases |
| View | Download | 0.540 | b.1.1 | Immunoglobulin |
