YRC Public Data Repository - Protein Structure Prediction

Protein:	CSN5B_ARATH
Organism:	Arabidopsis thaliana
Length:	357 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSN5B_ARATH.

Description	E-value	Query Range	Subject Range
gi\|21593104 - gi\|21593104\|gb\|AAM65053.1\| putative JUN kinase activator protein [Arabidopsis thaliana]	353.0	[0..1]	[357..1]
gi\|12002865 - gi\|12002865\|gb\|AAG43411.1\| JAB [Lycopersicon esculentum]	346.0	[0..3]	[357..8]
CSN5_MOUSE - COP9 signalosome complex subunit 5 OS=Mus musculus GN=Cops5 PE=1 SV=3	326.0	[0..1]	[339..1]
gi\|76634466 - gi\|76634466\|ref\|XP_583747.2\| PREDICTED: similar to COP9 signalosome subunit 5 isoform 1 [Bos taurus]	325.0	[0..1]	[339..1]
CSN5_XENTR - COP9 signalosome complex subunit 5 OS=Xenopus tropicalis GN=cops5 PE=2 SV=1	325.0	[0..1]	[341..1]
gi\|57107765 - gi\|57107765\|ref\|XP_535093.1\| PREDICTED: similar to COP9 signalosome complex subunit 5 (Signalosome s...	325.0	[0..1]	[339..1]
gi\|208966076 - gi\|208966076\|dbj\|BAG73052.1\| COP9 constitutive photomorphogenic homolog subunit 5 [synthetic constru... tr\|G1T1D9\|G1T1D9... - pep:novel chromosome:oryCun2:3:82873614:82887551:-1 gene:ENSOCUG00000011490 transcript:ENSOCUT000000... ENSCJAT00000008947 - null tr\|M3W0S8\|M3W0S8... - COP9 signalosome subunit 5 OS=Felis catus GN=COPS5 PE=4 SV=1 gi\|109086604, gi... - gi\|109086606\|ref\|XP_001098042.1\| PREDICTED: similar to COP9 signalosome subunit 5 isoform 6 [Macaca ... gi\|114620389, gi... - gi\|114620393\|ref\|XP_001162723.1\| PREDICTED: COP9 signalosome subunit 5 isoform 7 [Pan troglodytes], ... COPS5 - COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis)	325.0	[0..1]	[339..1]

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Predicted Domain #1

Region A:
Residues: [1-56]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGSSSAIAR KTWELENNIL PVEPTDSASD SIFHYDDASQ AKIQQEKPWA SDPNYF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [57-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRVHISALAL LKMVVHARSG GTIEIMGLMQ GKTEGDTIIV MDAFALPVEG TETRVNAQSD  60
   61 AYEYMVEYSQ TSKLAGRLEN VVGWYHSHPG YGCWLSGIDV STQMLNQQYQ EPFLAVVIDP 120
  121 TRTVSAGKVE IGAFRTYPEG HKISDDHVSE YQTIPLNKIE DFGVHCKQYY SL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.69897
Match:	2o95A
Description:	No description for 2o95A was found.

Predicted Domain #3

Region A:
Residues: [229-357]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DITYFKSSLD SHLLDLLWNK YWVNTLSSSP LLGNGDYVAG QISDLAEKLE QAESQLANSR  60
   61 YGGIAPAGHQ RRKEDEPQLA KITRDSAKIT VEQVHGLMSQ VIKDILFNSA RQSKKSADDS 120
  121 SDPEPMITS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.893	a.24.1	Apolipoprotein

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits