YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: AHL22_ARATH
Organism: Arabidopsis thaliana
Length: 317 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AHL22_ARATH.

Description E-value Query
Range
Subject
Range
gi|6633838 - gi|6633838|gb|AAF19697.1|AC008047_4 F2K11.15 [Arabidopsis thaliana]
209.0 [0..3] [304..410]

Back

Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQVSRSLPP PFLSRDLHLH PHHQFQHQQQ QQQQNHGHDI DQHRIGGLKR DRDADIDPNE  60
   61 HSSAGKDQST PGSGGESGGG GGGDNHITRR PRGRPAGSKN KPKPPIIITR DSANAL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [117-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSHVMEVANG CDVMESVTVF ARRRQRGICV LSGNGAVTNV TIRQPASVPG GGSSVVNLHG  60
   61 RFEILSLSGS FLPPPAPPAA SGLTIYLAGG QGQVVGGSVV GPLMASGPVV IMAASFGNAA 120
  121 YERLPLEEDD QEEQTAGAVA NNIDGNATMG GGTQTQTQTQ QQQQQQLMQD PTSFIQGLPP 180
  181 NLMNSVQLPA EAYWGTPRPS F

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.69897
Match: 2nmuA
Description: No description for 2nmuA was found.

Predicted functions:

Term Confidence Notes
catalytic activity 0.210430303475354 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle