YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ELCL_ARATH
Organism: Arabidopsis thaliana
Length: 368 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ELCL_ARATH.

Description E-value Query
Range
Subject
Range
gi|76657158 - gi|76657158|ref|XP_877281.1| PREDICTED: similar to tumor susceptibility gene 101 isoform 2 [Bos taur...
226.0 [0..20] [353..4]

Back

Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPPAKMQE IHQFLSSALT QRGPSALPYA ENTKSLIRQH LLNLISSYTS LDPKTATFTH  60
   61 NDGRSVILLQ ADGTIPMPFQ GVSYNIPVVI WLLESYPQYP PCVYVNPTRD MIIKRP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.09691
Match: 2f0rA
Description: No description for 2f0rA was found.

Predicted functions:

Term Confidence Notes
catalytic activity 0.36134415541475 bayes_pls_golite062009
ligase activity 0.0718869348666398 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 0.0371971638467299 bayes_pls_golite062009
acid-amino acid ligase activity 0.0334819228148397 bayes_pls_golite062009
small conjugating protein ligase activity 0.0318206634586797 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [117-368]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSNVSPSGLV SLPYLQNWIY PSSNLVDLAS HLSAAFSRDP PLYSQRRPPP QPSPSIGSGY  60
   61 SRPLPPRQTD DAAEVYKKNA INRIVEMVHG DIVLMRSARE VETEGLLSLQ SDLKRREEEI 120
  121 NNGFKEMVIE KETLEQQLQV IAMNTDVLGS WIRENQGKAK DLLVDLDVDD SFECIDSLSK 180
  181 QMLECTALDL AIEDVVYSMD KSFRDGSLPF DQYLRNVRLL SREQFFHRAT AEKVREIQMD 240
  241 AQVASIAARL HS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.09691
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle