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View Structure Prediction Details

Protein: CAPP3_ARATH
Organism: Arabidopsis thaliana
Length: 968 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAPP3_ARATH.

Description E-value Query
Range
Subject
Range
gi|7436543, gi|2... - pir||T09846 phosphoenolpyruvate carboxylase (EC 4.1.1.31) 1 - upland cotton, gi|2266947|gb|AAB80714....
1541.0 [0..1] [968..1]

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Predicted Domain #1
Region A:
Residues: [1-968]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRNIEKMA SIDAQLRQLV PAKVSEDDKL VEYDALLLDR FLDILQDLHG EDLRETVQEL  60
   61 YELSAEYEGK REPSKLEELG SVLTSLDPGD SIVISKAFSH MLNLANLAEE VQIAHRRRIK 120
  121 KLKKGDFVDE SSATTESDIE ETFKRLVSDL GKSPEEIFDA LKNQTVDLVL TAHPTQSVRR 180
  181 SLLQKHGRIR DCLAQLYAKD ITPDDKQELD ESLQREIQAA FRTDEIRRTP PTPQDEMRAG 240
  241 MSYFHETIWK GVPKFLRRVD TALKNIGIDE RVPYNAPLIQ FSSWMGGDRD GNPRVTPEVT 300
  301 RDVCLLARMM AANLYYNQIE NLMFELSMWR CTDEFRVRAD ELHRNSRKDA AKHYIEFWKT 360
  361 IPPTEPYRVI LGDVRDKLYH TRERSRQLLS NGISDIPEEA TFTNVEQFLE PLELCYRSLC 420
  421 SCGDSPIADG SLLDFLRQVS TFGLSLVRLD IRQESERHTD VLDAITKHLD IGSSYRDWSE 480
  481 EGRQEWLLAE LSGKRPLFGP DLPKTEEISD VLDTFKVISE LPSDCFGAYI ISMATSPSDV 540
  541 LAVELLQREC HVKNPLRVVP LFEKLADLEA APAAVARLFS IDWYKNRING KQEVMIGYSD 600
  601 SGKDAGRLSA AWELYKAQEE LVKVAKKYGV KLTMFHGRGG TVGRGGGPTH LAILSQPPDT 660
  661 VNGSLRVTVQ GEVIEQSFGE AHLCFRTLQR FTAATLEHGM NPPISPKPEW RALLDEMAVV 720
  721 ATEEYRSVVF QEPRFVEYFR LATPELEYGR MNIGSRPSKR KPSGGIESLR AIPWIFAWTQ 780
  781 TRFHLPVWLG FGAAFRYAIK KDVRNLHMLQ DMYKQWPFFR VTIDLIEMVF AKGDPGIAAL 840
  841 YDKLLVSEDL WAFGEKLRAN FDETKNLVLQ TAGHKDLLEG DPYLKQRLRL RDSYITTLNV 900
  901 CQAYTLKRIR DANYNVTLRP HISKEIMQSS KSAQELVKLN PTSEYAPGLE DTLILTMKGI 960
  961 AAGLQNTG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1jqoA
Description: Phosphoenolpyruvate carboxylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.96882793316847 bayes_pls_golite062009
3-methyl-2-oxobutanoate hydroxymethyltransferase activity 1.14607009350249 bayes_pls_golite062009
isocitrate lyase activity 0.788938993856531 bayes_pls_golite062009
lyase activity 0.70986506551964 bayes_pls_golite062009
transferase activity 0.5687068385416 bayes_pls_golite062009
oxo-acid-lyase activity 0.404868472347919 bayes_pls_golite062009
carbon-carbon lyase activity 0.36217387205482 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle