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View Structure Prediction Details

Protein: DOT3_ARATH
Organism: Arabidopsis thaliana
Length: 607 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DOT3_ARATH.

Description E-value Query
Range
Subject
Range
gi|72384490 - gi|72384490|gb|AAZ67606.1| 80A08_21 [Brassica rapa subsp. pekinensis]
491.0 [0..1] [607..1]
gi|218193389 - gi|218193389|gb|EEC75816.1| hypothetical protein OsI_12774 [Oryza sativa Indica Group]
gi|108710040 - gi|108710040|gb|ABF97835.1| transposon protein, putative, Mutator sub-class, expressed [Oryza sativa...
486.0 [0..26] [597..3]
gi|102139797 - gi|102139797|gb|ABF69982.1| nonphototropic hypocotyl 3 (NPH3) family protein [Musa acuminata]
480.0 [0..42] [604..63]
gi|241941352, gi... - gi|242080467|ref|XP_002445002.1| hypothetical protein SORBIDRAFT_07g002590 [Sorghum bicolor], gi|241...
478.0 [0..29] [563..5]
gi|25336228, gi|... - gi|6634762|gb|AAF19742.1|AC009917_1 Contains a bZIP transcription factor PF|00170 domain. ESTs gb|R...
477.0 [0..29] [589..2]
gi|92896160 - gi|92896160|gb|ABE93078.1| BTB/POZ; NPH3 [Medicago truncatula]
460.0 [0..11] [607..5]

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Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSVSAAERL KSFGDAGPVC NKSIIFPSRV VTLANSFEKK DRSWYVKSQI PTDLSIQVND  60
   61 ITFKAHKFPL ISKCGYISSI ELKPSTSENG YHLKLENFPG GADTFETILK FCYNLPLDLN 120
  121 PLNVAPLRCA SEYLYMTEEF EAGNLISKTE AFITFVVLAS WRDTLTVLR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.045757
Match: 2ihcA
Description: No description for 2ihcA was found.

Predicted Domain #2
Region A:
Residues: [170-373]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SCTNLSPWAE NLQIVRRCCD LLAWKACNDN NIPEDVVDRN ERCLYNDIAT LDIDHFMRVI  60
   61 TTMKARRAKP QITGKIIMKY ADNFLPVIND DLEGIKGYGL GKNELQFSVN RGRMEESNSL 120
  121 GCQEHKETIE SLVSVLPPQS GAVSCHFLLR MLKTSIVYSA SPALISDLEK RVGMALEDAN 180
  181 VCDLLIPNFK NEEQQERVRI FEFF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [374-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LMHEQQQVLG KPSISKLLDN YLAEIAKDPY LPITKFQVLA EMLPENAWKC HDGLYRAIDM  60
   61 FLKTHPS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.899 N/A N/A a.7.17 Description not found.

Predicted Domain #4
Region A:
Residues: [441-498]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSDHDRRRLC KTMNCEKLSL DACLHAAQND RLPLRTIVQI NTQVLFSEQV KMRMMMQD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [499-607]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLPEKEEENS GGREDKRMSR DNEIIKTLKE ELENVKKKMS ELQSDYNELQ QEYERLSSKQ  60
   61 KSSHNWGLRW QKVKKSFQTK REDEETRERT RRRSSTGQRT SFRRRMSMS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle