| Protein: | TRB3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 295 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRB3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
192.0 | [0..1] | [285..1] |
|
Region A: Residues: [1-116] |
1 11 21 31 41 51
| | | | | |
1 MGAPKLKWTP EEETALKAGV LKHGTGKWRT ILSDPVYSTI LKSRSNVDLK DKWRNISVTA 60
61 LWGSRKKAKL ALKRTPLSGS RQDDNATAIT IVSLANGDVG GQQIDAPSPP AGSCEP
|
| Detection Method: |  |
| Confidence: | 14.30103 |
| Match: | 1h88C |
| Description: | c-Myb, DNA-binding domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.334577365229545 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0696342306231097 | bayes_pls_golite062009 |
|
Region A: Residues: [117-194] |
1 11 21 31 41 51
| | | | | |
1 PRPSTSVDKI ILEAITSLKR PFGPDGKSIL MYIEENFKMQ PDMKRLVTSR LKYLTNVGTL 60
61 VKKKHKYRIS QNYMAEGE
|
| Detection Method: | |
| Confidence: | 10.69897 |
| Match: | 1hstA |
| Description: | Histone H5, globular domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
|
Region A: Residues: [195-295] |
1 11 21 31 41 51
| | | | | |
1 GQRSPQLLLE GNKENTPKPE ENGVKNLTKS QVGGEVMIMG MTEKEAAAAA ARAVAEAEFA 60
61 MAEAEEAARE ADKAEAEAEA AHIFAKAAMK AVKYRMHSQT R
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.914 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.888 | a.47.2 | t-snare proteins |
| View | Download | 0.888 | a.47.2 | t-snare proteins |
| View | Download | 0.875 | a.47.2 | t-snare proteins |
| View | Download | 0.860 | a.47.2 | t-snare proteins |
