| Protein: | PSD1A_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 1004 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSD1A_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
908.0 | [0..1] | [1004..1] |
|
Region A: Residues: [1-124] |
1 11 21 31 41 51
| | | | | |
1 MATPMVSSAG GLLAMLNEPH PVLKLHALSN LNNLVDQFWP EISTSVPIIE SLYEDEEFDL 60
61 HQRQLAALLV SKVFYYLGEL NDSLSYALGA GPLFDVSEDS DYVHTLLAKA IDEYASLRSK 120
121 AVES
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [125-214] |
1 11 21 31 41 51
| | | | | |
1 NEMVDIDPRL EAIVERMLGK CISDGKYQQA MGIAIECRRL DKLEEAIIKS DNVQGTLSYC 60
61 INVSHSFVNR REYRHEVLSL LVKVYQKLPS
|
| Detection Method: | |
| Confidence: | 4.522879 |
| Match: | 1qgkA |
| Description: | Importin beta |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [215-709] |
1 11 21 31 41 51
| | | | | |
1 PDYLSICQCL MFLDEPQGVA SILEKLLRSE NKDDALLALQ IAFDLVENEH QAFLLSVRDR 60
61 LPAPKTRAVE ATQAVETTIA PNENPSGDVQ MADETPAQTI VHETDPVDAT YAERLTKIKG 120
121 ILSGETSIQL TLQFLYSHNK SDLLILKTIK QSVEMRNSVC HSATIYANAI MHAGTTVDTF 180
181 LRENLDWLSR ATNWAKFSAT AGLGVIHRGH LQQGRSLMAP YLPQGGAGGG GSPYSEGGAL 240
241 YALGLIHANH GEGIKQFLRD SLRSTNVEVI QHGACLGLGL SALGTADEEI YDDVKSVLYT 300
301 DSAVAGEAAG ISMGLLLVGT ATEKASEMLA YAHETQHEKI IRGLALGIAL TVYGREEGAD 360
361 TLIEQMTRDQ DPIIRYGGMY ALALAYSGTA NNKAIRQLLH FAVSDVSDDV RRTAVLALGF 420
421 VLYSDPEQTP RIVSLLSESY NPHVRYGAAL AVGISCAGTG LSEAISLLEP LTSDVVDFVR 480
481 QGALIAMAMV MVQIS
|
| Detection Method: | |
| Confidence: | 7.09691 |
| Match: | 1g3jA |
| Description: | beta-Catenin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.86831493830281 | bayes_pls_golite062009 |
| hydrolase activity | 2.5894939457048 | bayes_pls_golite062009 |
| protein binding | 1.63705839411934 | bayes_pls_golite062009 |
| nucleic acid binding | 1.13208464017585 | bayes_pls_golite062009 |
| DNA binding | 0.171056781378569 | bayes_pls_golite062009 |
| transcription regulator activity | 0.123389318446902 | bayes_pls_golite062009 |
|
Region A: Residues: [710-801] |
1 11 21 31 41 51
| | | | | |
1 EASDSRVGVF RRQLEKIILD KHEDTMSKMG AILASGILDA GGRNVTIRLL SKTKHDKVTA 60
61 VIGLAVFSQF WYWYPLIYFI SLAFSPTAFI GL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [802-896] |
1 11 21 31 41 51
| | | | | |
1 NYDLKVPKFE FMSHAKPSLF EYPKPTTVPT ANTAVKLPTA VLSTSVKAKA RAKKEAEQKA 60
61 IAEKTSGPEK PVNESGSGKG KASTEKEGDS MQVDS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [897-1004] |
1 11 21 31 41 51
| | | | | |
1 PAAVEKKAPE PEPAFEILVN PARVVPAQEK YIKLLDDSRY VPVKLAPSGF VLLKDLREHE 60
61 PEVLSLTDAP TSTASPATGT AAAAQGTPAS AMAVDDEPQP PQAFEYAS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
