| Protein: | PUB25_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 421 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB25_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
157.0 | [0..167] | [419..175] |
|
|
155.0 | [0..166] | [419..180] |
|
|
153.0 | [0..164] | [419..169] |
|
|
153.0 | [0..165] | [419..172] |
|
|
153.0 | [0..162] | [419..267] |
|
|
153.0 | [0..162] | [419..167] |
|
|
153.0 | [0..165] | [419..178] |
|
|
153.0 | [0..162] | [419..143] |
|
|
153.0 | [0..162] | [419..139] |
|
Region A: Residues: [1-98] |
1 11 21 31 41 51
| | | | | |
1 MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR 60
61 APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQ
|
| Detection Method: |  |
| Confidence: | 10.154902 |
| Match: | 1t1hA |
| Description: | NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [99-161] |
1 11 21 31 41 51
| | | | | |
1 PADPTSVRAL LSQASAITGT HVSVRSRAAA LRRLRGFARD SDKNRVLIAA HNATEILIKI 60
61 LFS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.927 | a.8.11 | Description not found. |
| View | Download | 0.901 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.846 | a.8.9 | Description not found. |
| View | Download | 0.729 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.729 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.692 | a.8.11 | Description not found. |
| View | Download | 0.511 | a.22.1 | Histone-fold |
| View | Download | 0.491 | a.112.1 | Description not found. |
| View | Download | 0.483 | d.68.3 | SirA-like |
|
Region A: Residues: [162-421] |
1 11 21 31 41 51
| | | | | |
1 ETTSSELVSE SLALLVMLPI TEPNQFVSIS SDPGRVEFLT RLLFDSSIET RVNAAALIEI 60
61 VSTGTKSADL KGSISNSESV FEGVLDLLRN PISSRRALKI GIKTLFALCS VKSTRHIAIT 120
121 AGAPEILIDR LAADFDRCDT ERALATVELL CRTPEGCAAF GEHALTVPLL VKTILRVSDR 180
181 ATEYAAGALL ALCTAEERWR EEAAGAGVVV QLLLMVQSEC TERAKKKAQK LLKLLRDSWP 240
241 DYNSFANSDD FGCSSQVVPF
|
| Detection Method: | |
| Confidence: | 36.522879 |
| Match: | 1ee4A |
| Description: | Karyopherin alpha |
Matching Structure (courtesy of the PDB): |
|
