YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2129633, gi\|1...
Organism:	Arabidopsis thaliana
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2129633, gi|1....

Description	E-value	Query Range	Subject Range
gi\|11612201 - gi\|11612201\|gb\|AAG37453.1\| seed maturation protein LEA 4 [Glycine tomentella]	130.0	[0..2]	[134..9]
gi\|4836407, gi\|8... - gi\|82394638\|gb\|ABB72408.1\| seed maturation protein [Glycine max], gi\|4836407\|gb\|AAD30428.1\|AF117725_... gi\|82394644, gi\|... - gi\|82394644\|gb\|ABB72411.1\| seed maturation protein [Glycine soja], gi\|82394642\|gb\|ABB72410.1\| seed m...	113.0	[0..1]	[131..1]
gi\|82394672, gi\|... - gi\|82394672\|gb\|ABB72425.1\| seed maturation protein [Glycine tomentella], gi\|82394668\|gb\|ABB72423.1\| ... gi\|82394646 - gi\|82394646\|gb\|ABB72412.1\| seed maturation protein [Glycine tabacina]	112.0	[0..1]	[131..1]
gi\|82394632 - gi\|82394632\|gb\|ABB72405.1\| seed maturation protein [Glycine canescens]	112.0	[0..1]	[131..1]
gi\|82394636 - gi\|82394636\|gb\|ABB72407.1\| seed maturation protein [Glycine latifolia]	110.0	[0..1]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSAKQKISD MASTAKEKMV ICQAKADEKA ERAMARTKEE KEIAHQRRKA KEAEANMDMH  60
   61 MAKAAHAEDK LMAKQSHYHV TDHGPHVPQQ APVPAPAPVM GHGYGHNPTG VTSVPPQTYH 120
  121 PTYPPTGHHN HHHY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	39.619789
Match:	PF03760.6
Description:	No description for PF03760.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits