YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|2129633, gi|1...
Organism: Arabidopsis thaliana
Length: 134 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2129633, gi|1....

Description E-value Query
Range
Subject
Range
gi|11612201 - gi|11612201|gb|AAG37453.1| seed maturation protein LEA 4 [Glycine tomentella]
130.0 [0..2] [134..9]
gi|4836407, gi|8... - gi|82394638|gb|ABB72408.1| seed maturation protein [Glycine max], gi|4836407|gb|AAD30428.1|AF117725_...
gi|82394644, gi|... - gi|82394644|gb|ABB72411.1| seed maturation protein [Glycine soja], gi|82394642|gb|ABB72410.1| seed m...
113.0 [0..1] [131..1]
gi|82394672, gi|... - gi|82394672|gb|ABB72425.1| seed maturation protein [Glycine tomentella], gi|82394668|gb|ABB72423.1| ...
gi|82394646 - gi|82394646|gb|ABB72412.1| seed maturation protein [Glycine tabacina]
112.0 [0..1] [131..1]
gi|82394632 - gi|82394632|gb|ABB72405.1| seed maturation protein [Glycine canescens]
112.0 [0..1] [131..1]
gi|82394636 - gi|82394636|gb|ABB72407.1| seed maturation protein [Glycine latifolia]
110.0 [0..1] [131..1]

Back

Predicted Domain #1
Region A:
Residues: [1-134]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSAKQKISD MASTAKEKMV ICQAKADEKA ERAMARTKEE KEIAHQRRKA KEAEANMDMH  60
   61 MAKAAHAEDK LMAKQSHYHV TDHGPHVPQQ APVPAPAPVM GHGYGHNPTG VTSVPPQTYH 120
  121 PTYPPTGHHN HHHY

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 39.619789
Match: PF03760.6
Description: No description for PF03760.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.523 N/A N/A a.24.9 alpha-catenin/vinculin
View Download 0.496 N/A N/A a.19.1 Fertilization protein
View Download 0.496 N/A N/A a.19.1 Fertilization protein
View Download 0.488 N/A N/A d.162.1 LDH C-terminal domain-like
View Download 0.488 N/A N/A d.162.1 LDH C-terminal domain-like
View Download 0.486 N/A N/A a.216.1 Description not found.
View Download 0.458 N/A N/A d.162.1 LDH C-terminal domain-like
View Download 0.375 N/A N/A d.162.1 LDH C-terminal domain-like
View Download 0.346 N/A N/A d.162.1 LDH C-terminal domain-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle