YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: TRP4_ARATH
Organism: Arabidopsis thaliana
Length: 640 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRP4_ARATH.

Description E-value Query
Range
Subject
Range
gi|110742311 - gi|110742311|dbj|BAE99080.1| telomeric DNA-binding protein 1 [Arabidopsis thaliana]
720.0 [0..1] [640..1]
gi|12043533 - gi|12043533|emb|CAC19789.1| MYB-like DNA-binding protein [Catharanthus roseus]
637.0 [0..1] [636..1]
gi|23664357 - gi|23664357|gb|AAN39330.1| telomere binding protein TBP1 [Nicotiana glutinosa]
629.0 [0..1] [636..1]
gi|483444 - gi|483444|emb|CAA55693.1| initiator-binding protein [Zea mays]
625.0 [0..1] [625..1]
gi|108707446 - gi|108707446|gb|ABF95241.1| initiator-binding protein, putative, expressed [Oryza sativa (japonica c...
621.0 [0..1] [625..1]
gi|2129918, gi|4... - gi|441310|emb|CAA44518.1| BPF-1 [Petroselinum crispum], gi|396197|emb|CAA48413.1| BPF-1 [Petroselinu...
593.0 [0..1] [627..1]

Back

Predicted Domain #1
Region A:
Residues: [1-90]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVKRKLNCG GSNGFDFPNI PKAPRSSRRK VSGKRSDDES EICAIDLLAS LAGKLLEESE  60
   61 SSSTSTYASE ADNLDHLGGL IKQELEDGYT 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [91-320]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKPCKSEFFD PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI  60
   61 TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ VPNDSFKGYR 120
  121 NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL 180
  181 KALYRKRKLC YGYNPWKRET IHRKRRLSDK GLVVNYDGGL SSESVSNSPE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [321-422]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL  60
   61 GGGIRIGVLV QGKKVRDDNN TLSQTGLSCR ENLGNLGFTL EP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.12
Match: 1v5oA
Description: Solution Structure of the Ubiquitin-like Domain from Mouse Hypothetical 1700011N24Rik Protein
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [423-530]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLETLPVPLC SETPVLSLPT DSTKLSERSA ASPALETGIP LPPQDEDYLI NLGNSVENND  60
   61 ELVPHLSDIP ADEQPSSDSR ALVPVLALES DALALVPVNE KPKRTELS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [531-640]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI  60
   61 SPQQRRGEPV PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.69897
Match: 2ajeA
Description: No description for 2ajeA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle