| Protein: | RK13_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 241 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RK13_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
294.0 | [0..5] | [241..6] |
|
Region A: Residues: [1-83] |
1 11 21 31 41 51
| | | | | |
1 MAVLCSSSTV ILSSSSVKSS GSERKSPFLG FSLTAISKPS VRVGIYANSK RGLQVKCEAE 60
61 PTTTTSLVPA NQRWMFDEEE ANG
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.832 | b.101.1 | Ribonuclease domain of colicin E3 |
| View | Download | 0.753 | b.101.1 | Ribonuclease domain of colicin E3 |
| View | Download | 0.712 | b.101.1 | Ribonuclease domain of colicin E3 |
| View | Download | 0.668 | b.101.1 | Ribonuclease domain of colicin E3 |
| View | Download | 0.655 | c.51.1 | Anticodon-binding domain of Class II aaRS |
|
Region A: Residues: [84-241] |
1 11 21 31 41 51
| | | | | |
1 PDIWNTTWYP KASDHVNTDK PWFVVDATDK ILGRLASTIA NHIRGKNLAS YTPSVDMGAF 60
61 VIVVNAEKVA VSGKKRNQKL YRRHSGRPGG MTVETFDQLQ QRIPERIVEH AVRGMLPKGR 120
121 LGRALFNHLK VYKGPDHPHE AQKPLDLPIR DKRIQLQK
|
| Detection Method: | |
| Confidence: | 55.0 |
| Match: | 1p85H |
| Description: | 70S ribosome functional complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| structural constituent of ribosome | 10.0286073270483 | bayes_pls_golite062009 |
| structural molecule activity | 9.45133141168812 | bayes_pls_golite062009 |
| binding | 1.22159759850364 | bayes_pls_golite062009 |
| RNA binding | 0.840527362301162 | bayes_pls_golite062009 |
| nucleic acid binding | 0.513360853458228 | bayes_pls_golite062009 |
