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View Structure Prediction Details

Protein: gi|15237916, gi|...
Organism: Arabidopsis thaliana
Length: 350 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15237916, gi|....

Description E-value Query
Range
Subject
Range
gi|10177081, gi|... - gi|15237918|ref|NP_197810.1| lipase class 3-related [Arabidopsis thaliana], gi|10177081|dbj|BAB10387...
418.0 [0..2] [340..14]

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Predicted Domain #1
Region A:
Residues: [1-246]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNLKKSTRS DELSRSGPPQ IPNPDWNNLY HRTTVASCLV QGVYAKERDR ENNRNGSESL  60
   61 ATPWWKSFNF TLDESEILYD AFDGSIYGAV FQNMINYENT PNSIVVPPRY VIALRGTVPS 120
  121 DVSDWIHNSR IVLEKLHGGG KHMHVIRKIY SLVAKHGNTA VWIAGHSLGA GLALLAGKDM 180
  181 AMSGLPVEAY IFNPPISLIP LEQCGYNHEL NFVYRLTRDL FKAGIAKVVD LDEGQEGPRY 240
  241 KNLASW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.221849
Match: 1tiaA
Description: AN UNUSUAL BURIED POLAR CLUSTER IN A FAMILY OF FUNGAL LIPASES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.866238607554457 bayes_pls_golite062009
hydrolase activity 0.52702612560045 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [247-350]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPHLFVNQSD VICSEYIGYF NHVVTMTEAG LGEISRLASG YSVRRMLFGD GENWSSSSTP  60
   61 DHLHFLPSAF MIVNKTEASE FYNKHGIHQW WNHMLKQSTT FSSY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle