YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|4938477, gi\|7...
Organism:	Arabidopsis thaliana
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4938477, gi|7....

Description	E-value	Query Range	Subject Range
gi\|30841448 - gi\|30841448\|gb\|AAP34362.1\| fiber protein Fb15 [Gossypium barbadense]	160.0	[0..1]	[90..1]
gi\|92877483 - gi\|92877483\|gb\|ABE84580.1\| fiber protein Fb15 [Medicago truncatula]	126.0	[0..1]	[87..1]
gi\|42565482 - gi\|42565482\|gb\|AAS21008.1\| fiber protein [Hyacinthus orientalis]	109.0	[0..8]	[90..7]
gi\|125538299 - gi\|125538299\|gb\|EAY84694.1\| hypothetical protein OsI_06064 [Oryza sativa Indica Group] gi\|50251207, gi\|... - gi\|50251207\|dbj\|BAD27614.1\| putative fiber protein Fb15 [Oryza sativa Japonica Group], gi\|215767695\|...	105.0	[0..1]	[88..1]
gi\|116056008 - gi\|116056008\|emb\|CAL58541.1\| unnamed protein product [Ostreococcus tauri]	51.0	[0..1]	[90..1]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRRVYSEI RGKKVTELPG YIKSTFSMET VKTSVKRGLD NYNEKYIQTS SVDPILHICF  60
   61 YGMAFSYLVA LPNERRHLEH QQHAKEHGGH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.899	a.29.10	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits