YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|4938477, gi|7...
Organism: Arabidopsis thaliana
Length: 90 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4938477, gi|7....

Description E-value Query
Range
Subject
Range
gi|30841448 - gi|30841448|gb|AAP34362.1| fiber protein Fb15 [Gossypium barbadense]
160.0 [0..1] [90..1]
gi|92877483 - gi|92877483|gb|ABE84580.1| fiber protein Fb15 [Medicago truncatula]
126.0 [0..1] [87..1]
gi|42565482 - gi|42565482|gb|AAS21008.1| fiber protein [Hyacinthus orientalis]
109.0 [0..8] [90..7]
gi|125538299 - gi|125538299|gb|EAY84694.1| hypothetical protein OsI_06064 [Oryza sativa Indica Group]
gi|50251207, gi|... - gi|50251207|dbj|BAD27614.1| putative fiber protein Fb15 [Oryza sativa Japonica Group], gi|215767695|...
105.0 [0..1] [88..1]
gi|116056008 - gi|116056008|emb|CAL58541.1| unnamed protein product [Ostreococcus tauri]
51.0 [0..1] [90..1]

Back

Predicted Domain #1
Region A:
Residues: [1-90]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRRVYSEI RGKKVTELPG YIKSTFSMET VKTSVKRGLD NYNEKYIQTS SVDPILHICF  60
   61 YGMAFSYLVA LPNERRHLEH QQHAKEHGGH 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.899 a.29.10 Description not found.
View Download 0.824 a.204.1 Description not found.
View Download 0.818 a.12.1 Kix domain of CBP (creb binding protein)
View Download 0.778 a.12.1 Kix domain of CBP (creb binding protein)
View Download 0.713 a.204.1 Description not found.
View Download 0.695 a.204.1 Description not found.
View Download 0.516 a.118.9 ENTH/VHS domain
View Download 0.412 a.118.1 ARM repeat
View Download 0.399 a.4.3 ARID-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle