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View Structure Prediction Details

Protein: LAC1_ARATH
Organism: Arabidopsis thaliana
Length: 581 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LAC1_ARATH.

Description E-value Query
Range
Subject
Range
gi|19571025, gi|... - gi|34908196|ref|NP_915445.1| putative laccase [Oryza sativa (japonica cultivar-group)], gi|215694814...
444.0 [0..11] [581..12]

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Predicted Domain #1
Region A:
Residues: [1-581]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLGFLIIS TFLLLFTTLL PYSSASTTRR FHFNVEWKKV TRLCHTKQLL TVNGQYPGPT  60
   61 VAVHEGDIVE IKVTNRIAHN TTIHWHGLRQ YRTGWADGPA YITQCPIRSK QSYTYRFKVE 120
  121 DQRGTLLWHA HHSWQRASVY GAFIIYPRQP YPFSGSHIQS EIPIILGEWW NDDVDNVEKA 180
  181 MMKTGAGAKV SDAYTLNGLP GPLYPCSTKD TFTATVDAGK TYILRIINAA LNNELFVAVA 240
  241 NHTLTVVEVD AVYTKPVHTK AIMIAPGQTT TLLLRADQLS GGEFLIAATP YVTSVFPFNN 300
  301 STTVGFIRYT GKTKPENSVN TRRRRRLTAM STVVALPNML DTKFATKFSD SIKSLGSAKY 360
  361 PCKVPTKIDK RVITTISLNL QDCPLNQTCD GYAGKRFFAS MNNISFVRPP ISILESYYKK 420
  421 QSKGVFSLDF PEKPPNRFDF TGVDPVSENM NTEFGTKLFE VEFGSRLEIV FQGTSFLNIE 480
  481 NHPLHVHGHN FFVVGRGFGN FDPEKDPKRY NLVDPPERNT FAVPTGGWAA IRINADNPGV 540
  541 WFIHCHLEQH TSWGLAMGFI VKDGPLPSQT LLPPPHDLPQ C

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 91.522879
Match: 1aozA
Description: Ascorbate oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrogen ion transmembrane transporter activity 4.08759434952417 bayes_pls_golite062009
cation transmembrane transporter activity 3.01218347550477 bayes_pls_golite062009
ion transmembrane transporter activity 2.94535655802043 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 2.6745480751389 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 2.65536020269373 bayes_pls_golite062009
transition metal ion transmembrane transporter activity 2.17429358667283 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 1.63942316748862 bayes_pls_golite062009
iron ion transmembrane transporter activity 1.51790376716885 bayes_pls_golite062009
transporter activity 1.20799429432885 bayes_pls_golite062009
metal ion transmembrane transporter activity 1.14867039407339 bayes_pls_golite062009
transmembrane transporter activity 1.09624639459552 bayes_pls_golite062009
substrate-specific transporter activity 0.85648428256869 bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity 0.761084719356529 bayes_pls_golite062009
copper ion binding 0.73440414441333 bayes_pls_golite062009
catalytic activity 0.733511559778369 bayes_pls_golite062009
oxidoreductase activity 0.61582564326478 bayes_pls_golite062009
oxidoreductase activity, oxidizing metal ions, oxygen as acceptor 0.575651787344859 bayes_pls_golite062009
ferroxidase activity 0.575651787344859 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle