YRC Public Data Repository - Protein Structure Prediction

Protein:	NADA_ARATH
Organism:	Arabidopsis thaliana
Length:	718 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NADA_ARATH.

Description	E-value	Query Range	Subject Range
gi\|116055836 - gi\|116055836\|emb\|CAL57921.1\| unnamed protein product [Ostreococcus tauri]	464.0	[0..100]	[711..13]
gi\|108862503, gi... - gi\|77554365\|gb\|ABA97161.1\| expressed protein [Oryza sativa (japonica cultivar-group)], gi\|108862503\|...	450.0	[0..256]	[712..3]
gi\|78359010, gi\|... - gi\|78368964\|ref\|ZP_00839150.1\| Quinolinate synthetase A [Shewanella sp. PV-4], gi\|78359010\|gb\|EAP008...	429.0	[0..235]	[687..1]
gi\|91793145, gi\|... - gi\|91793145\|ref\|YP_562796.1\| quinolinate synthetase [Shewanella denitrificans OS217], gi\|91715147\|gb...	423.0	[0..235]	[695..1]
gi\|119767348, gi... - gi\|68548456\|ref\|ZP_00587958.1\| Quinolinate synthetase A [Shewanella amazonensis SB2B], gi\|68513853\|g...	422.0	[0..235]	[687..1]
SO2342 - quinolinate synthetase complex subunit A NADA_SHEON - Quinolinate synthase A OS=Shewanella oneidensis (strain MR-1) GN=nadA PE=3 SV=1	422.0	[0..233]	[695..1]
gi\|114563109, gi... - gi\|69952031\|ref\|ZP_00639610.1\| Quinolinate synthetase A [Shewanella frigidimarina NCIMB 400], gi\|691...	421.0	[0..235]	[695..1]
gi\|68544343, gi\|... - gi\|68544343\|ref\|ZP_00583998.1\| Quinolinate synthetase A [Shewanella baltica OS155], gi\|68517964\|gb\|E... gi\|151365294, gi... - gi\|153000676\|ref\|YP_001366357.1\| quinolinate synthetase [Shewanella baltica OS185], gi\|151365294\|gb\|...	421.0	[0..235]	[695..1]
NADA_SHESM - Quinolinate synthase A OS=Shewanella sp. (strain MR-4) GN=nadA PE=3 SV=1	421.0	[0..233]	[695..1]
NADA_SHESA - Quinolinate synthase A OS=Shewanella sp. (strain ANA-3) GN=nadA PE=3 SV=1	421.0	[0..233]	[695..1]

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Predicted Domain #1

Region A:
Residues: [1-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALALSVAPT SSSLSSLLSR TPNPSPNFRT THLNFGSQRR IYTINPLLRS FKCLQSSSRD  60
   61 VNASPFSISA IASSSSSSQT TELVPYKLQR LVKEFKSLTE PIDRLKWVLH YASLLPQMPE 120
  121 SSKTESNRVM GCTARVWLDA ELGQDGKMRF CADSDSDVSK GMCSCLIQVL DEASPVEVME 180
  181 LKTEDLAELN VGLLGGERSR VNTWYNVLVS MQKKTRRLVA EREGKVPSFE PFPSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.221849
Match:	1ni7A
Description:	Hypothetical protein YgdK
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [236-637]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLTAHGIEAK GSFAQAQAKY LFPEESRVEE LVNVLKEKKI GVVAHFYMDP EVQGVLTAAQ  60
   61 KHWPHISISD SLVMADSAVT MAKAGCQFIT VLGVDFMSEN VRAILDQAGF EKVGVYRMSD 120
  121 ETIGCSLADA ASAPAYLNYL EAASRSPPSL HVVYINTSLE TKAFAHELVP TITCTSSNVV 180
  181 QTILQAFAQM PELTVWYGPD SYMGANIVKL FQQMTLMTNE EIANIHPKHS LDSIKSLLPR 240
  241 LHYFQEGTCI VHHLFGHEVV ERIKYMYCDA FLTAHLEVPG EMFSLAMEAK KREMGVVGST 300
  301 QNILDFIKQK VQEAVDRNVD DHLQFVLGTE SGMVTSIVAV IRSLLGSSAN SKLKVEVVFP 360
  361 VSSDSMTKTS SDSSNSIKVG DVALPVVPGV AGGEGCSIHG GC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	1wzuA
Description:	Crystal structure of quinolinate synthase (nadA)
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [638-718]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASCPYMKMNS LSSLLKVCHK LPDLENVYGG FIAERFKRQT PQGKLIADVG CEPILHMRHF  60
   61 QANKELPDKL VHQVLSCESK R

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.823	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits