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View Structure Prediction Details

Protein: CID9_ARATH
Organism: Arabidopsis thaliana
Length: 327 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CID9_ARATH.

Description E-value Query
Range
Subject
Range
gi|73976775 - gi|73976775|ref|XP_539581.2| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 1 ...
271.0 [0..3] [325..63]

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Predicted Domain #1
Region A:
Residues: [1-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVTEMPTD VVVVDDVKEV STKSEKIIDE GIEKSSITDS KTETESRLDM HKLVAMFKKL  60
   61 NPLAKEFFPS YYDPKKNNQV AKANQFLPAD DFETTKKQSG EEFDLDAKKD DNTRKRRNYS 120
  121 QGRRRLTGRI SKAQREDSIR RTVYVSDIDQ SVTEEGLAGL FSNCGQVVDC RICGDPHSVL 180
  181 RFAFVEFADD QGAHEALSLG GTMLGFYPVR VLPSKTAILP VNPTFLPRSE DEREMCTRTI 240
  241 YCTNIDKKVS QADVRNFFES ACGEVTRLRL LGDQLHSTRI AFVEFALADS ALSALNCSGM 300
  301 VVGSQPIRVS PSKTPVRPRI TRPPSTN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.522879
Match: 2ghpA
Description: No description for 2ghpA was found.

Predicted functions:

Term Confidence Notes
binding 0.950788308762215 bayes_pls_golite062009
nucleic acid binding 0.29562225149076 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle