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View Structure Prediction Details

Protein: YSL6_ARATH
Organism: Arabidopsis thaliana
Length: 676 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YSL6_ARATH.

Description E-value Query
Range
Subject
Range
gi|21592981 - gi|21592981|gb|AAM64930.1| unknown [Arabidopsis thaliana]
649.0 [0..1] [676..1]

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Predicted Domain #1
Region A:
Residues: [1-137]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTEIPRSAE ISEALLPPES EKTVTATEEH VPEWKEQITI RGLTVSALLG TLFCIITHKL  60
   61 NLTVGIIPSL NVAAGLLGFF FVKSWTGFLS KLGFTVKPFT KQENTVIQTC VVACYGLAFS 120
  121 GGFGSYLIAM DEKTYKL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [138-363]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IGADYPGNHA EDVINPGLWW MIGFLFVVSF LGLFSLVPLR KVMVLDYKLT YPSGTATAML  60
   61 INSFHTNTGA ELAGNQVKCL GKYLSLSLIW SCFKWFFSGI GDACGFDNFP TLGLTLFKNT 120
  121 FYFDFSPTYI GCGLICPHIV NCSVLLGAII SWGILWPFVS QHAGDWYPAD LGSNDFKGLY 180
  181 GYKVFIAIAI ILGDGLYNLV KIIAVTVKEL CSSRSRRLNL PIVTDG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [364-451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDDSEASEIL LVKKKRDEVF LKDRIPLEFA IAGYVGLAAI STATIPIIFP PLKWYFVLCS  60
   61 YFIAPALAFC NSYGTGLTDW SLASTYGK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [452-529]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IGLFIIASVV GSDGGVIAGL AACGVMMSIV STAADLMQDF KTGYLTLSSA KSMFVSQLVG  60
   61 TAMGCVIAPL TFWLFWTA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [530-676]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDIGDPNGPY KAPYAVIFRE MAILGIEGFA ELPKHCLALC YGFFIAALIV NLLRDITPPK  60
   61 ISQFIPIPMA MAVPFYIGAY FAIDMFVGTV ILFVWERINR KDAEDFAGAV ASGLICGDGI 120
  121 WTIPSAILSI LRINPPICMY FGPSSAR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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