YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|7484940, gi|2...
Organism: Arabidopsis thaliana
Length: 336 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7484940, gi|2....

Description E-value Query
Range
Subject
Range
gi|7511526, gi|3... - pir||T42247 polypeptide N-acetylgalactosaminyltransferase (EC 2.4.1.41) - Caenorhabditis elegans, gi...
198.0 [0..32] [334..141]

Back

Predicted Domain #1
Region A:
Residues: [1-336]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFLVTVAEF SLWLLLIVLF GFLSVVVFEA WRRRHSNVSV ETVTTLDDPK SIKPIPCPHI  60
   61 TDPAEKYLSL IVPAYNEELR LPAALEETMD YLQDRASRDK SFSFEVVIVD DGSVDGTKRV 120
  121 AFDFIRKYTI DNIRVIPLGK NQGKGEAIRK GMLHSRGQLL LMLDADGATK VTDLEKLENQ 180
  181 INAVAREEYS IRNPASKDMD FKIGDVQVSA FGSRAHLEEK ALATRKWYRN FLMKGFHLVV 240
  241 LLAAGPGIRD TQCGFKMFTR AAARRLFTNV HLKRWCFDVE LVYLCKRFNI PMVEISVKWS 300
  301 EIPGSKVSML SIPNMLWELA LMSVGYRTGM WKIHQV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.30103
Match: 1xhbA
Description: The Crystal Structure of UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase-T1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
mannosyltransferase activity 3.87594044828967 bayes_pls_golite062009
uridylyltransferase activity 2.78377598963895 bayes_pls_golite062009
transferase activity, transferring hexosyl groups 2.70047942699289 bayes_pls_golite062009
UTP:glucose-1-phosphate uridylyltransferase activity 2.67542562955569 bayes_pls_golite062009
transferase activity 2.62166586999833 bayes_pls_golite062009
UDP-glycosyltransferase activity 2.33861720107822 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 2.01768771829228 bayes_pls_golite062009
nucleotidyltransferase activity 2.00651267140641 bayes_pls_golite062009
UTP-monosaccharide-1-phosphate uridylyltransferase activity 1.90086040617591 bayes_pls_golite062009
catalytic activity 1.88676710996045 bayes_pls_golite062009
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity 1.60323537823461 bayes_pls_golite062009
alpha-1,2-mannosyltransferase activity 1.53617752123292 bayes_pls_golite062009
acetylgalactosaminyltransferase activity 1.33788133706753 bayes_pls_golite062009
polypeptide N-acetylgalactosaminyltransferase activity 1.10309252319727 bayes_pls_golite062009
cytidylyltransferase activity 0.983416157001861 bayes_pls_golite062009
transferase activity, transferring glycosyl groups 0.897978517422275 bayes_pls_golite062009
intramolecular oxidoreductase activity 0.79629851874184 bayes_pls_golite062009
binding 0.074398891333042 bayes_pls_golite062009
acetylglucosaminyltransferase activity 0.0562130308868509 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle