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View Structure Prediction Details

Protein: gi|10177265, gi|...
Organism: Arabidopsis thaliana
Length: 419 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|10177265, gi|....

Description E-value Query
Range
Subject
Range
gi|15236182, gi|... - pir||T05066 hypothetical protein M3E9.190 - Arabidopsis thaliana, gi|7269490|emb|CAB79493.1| hypoth...
342.0 [0..32] [418..498]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTDDFEVE TISEIMVPFH HHPLSSYASE FLTSCSLCLF STFLGEIVTR IRYQCMDCGL  60
   61 KLHDECINSL SLNRPFLC

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.49
Match: 1r79A
Description: Solution Structure of The C1 Domain of The Human Diacylglycerol Kinase Delta
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [79-191]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NHILKVYTHI FTSSGRIYEN TCHFCQSKLE FLFARCTICN LNVDIECLFA LPPLTISEPK  60
   61 HHKHSLSLLL RLVTFTCNAC GVEGDRNPYV CLECNLMVHK DCVENLPRVI SIN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.30103
Match: 1xa6A
Description: Crystal Structure of the Human Beta2-Chimaerin
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [192-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RHDHRISHTF HLGKKEGDWE CGVCRKMINC VYGGYKCSRC PSYAVHSRCA TRKEVWDGLE  60
   61 LEDVPEEEEE IEDPFKVIND KGDIIHFSHE EHVLRLDE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.280 N/A N/A b.1.1 Immunoglobulin
View Download 0.225 N/A N/A g.44.1 RING/U-box
View Download 0.208 N/A N/A d.206.1 YggU-like

Predicted Domain #4
Region A:
Residues: [290-419]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NYVIDDANMR CRCCILAING DPCYRCVECN FILHEACANL PRKKRHLLHN HKLTLSSTLI  60
   61 NKDIFHECGA CGIYTDGFIY ECRHEDCKKK IIKYDVRCSS VSEPFHHDLH QHPYTLPCKV 120
  121 RDDVRLVTKK 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.42
Match: 1v5nA
Description: Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle