YRC Public Data Repository - Protein Structure Prediction

Protein:	DGP10_ARATH
Organism:	Arabidopsis thaliana
Length:	586 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DGP10_ARATH.

Description	E-value	Query Range	Subject Range
gi\|78193489, gi\|... - gi\|78222234\|ref\|YP_383981.1\| peptidase S1C, Do [Geobacter metallireducens GS-15], gi\|78193489\|gb\|ABB...	294.0	[0..101]	[548..41]
gi\|59712832, gi\|... - gi\|59712832\|ref\|YP_205608.1\| serine endoprotease DegP (protease Do), periplasmic [Vibrio fischeri ES...	280.0	[0..69]	[547..5]
DEGP3_ARATH - Putative protease Do-like 3, mitochondrial OS=Arabidopsis thaliana GN=DEGP3 PE=3 SV=1	280.0	[0..1]	[574..1]
gi\|85721301, gi\|... - gi\|85858210\|ref\|YP_460412.1\| trypsin-like serine protease [Syntrophus aciditrophicus SB], gi\|8572130...	278.0	[0..52]	[547..7]
gi\|254230593, gi... - gi\|75854018\|ref\|ZP_00761743.1\| COG0265: Trypsin-like serine proteases, typically periplasmic, contai...	278.0	[0..69]	[547..5]
gi\|115463921, gi... - gi\|51854402\|gb\|AAU10782.1\| putative serine protease [Oryza sativa Japonica Group], gi\|50511464\|gb\|AA...	277.0	[0..36]	[574..50]
gi\|221563583, gi... - gi\|222054294\|ref\|YP_002536656.1\| protease Do [Geobacter sp. FRC-32], gi\|221563583\|gb\|ACM19555.1\| pro...	276.0	[0..103]	[547..43]
gi\|22122030 - gi\|22122030\|dbj\|BAC07235.1\| DegQ serine protease [Photobacterium damselae subsp. piscicida]	276.0	[0..69]	[547..5]
gi\|153840322, gi... - gi\|153840322\|ref\|ZP_01992989.1\| protease do [Vibrio parahaemolyticus AQ3810], gi\|149746017\|gb\|EDM571... gi\|28805416, gi\|... - gi\|28897207\|ref\|NP_796812.1\| protease DO [Vibrio parahaemolyticus RIMD 2210633], gi\|28805416\|dbj\|BAC... gi\|28805416 - gi\|28805416\|dbj\|BAC58696.1\| protease DO [Vibrio parahaemolyticus RIMD 2210633]	272.0	[0..84]	[547..20]
gi\|54310328, gi\|... - gi\|54310328\|ref\|YP_131348.1\| putative DegQ serine protease [Photobacterium profundum SS9], gi\|469147...	272.0	[0..69]	[547..5]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLRSFRTVE LLRRISTSSV SGYRTSPSLL QRCNGFQSYL PHRVTTTESP FPSHISRFCS  60
   61 SQSANSQNEN RHTTLSSPVS SRRVN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [86-586]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRKISRRRKA GKSLSISPAA DAVDLALDSV VKIFTVSTSP SYFLPWQNKS QRESMGSGFV  60
   61 ISGRKIITNA HVVADHSFVL VRKHGSSIKH RAEVQAVGHE CDLAILVVDS EVFWEGMNAL 120
  121 ELGDIPFLQE AVAVVGYPQG GDNISVTKGV VSRVEPTQYV HGATQLMAIQ IDAAINPGNS 180
  181 GGPAIMGNKV AGVAFQNLSG AENIGYIIPT PVIKHFINGV EECGKYIGFC SMGVSCQPME 240
  241 NGELRSGFQM SSEMTGVLVS KINPLSDAHK ILKKDDVLLA FDGVPIANDG TVPFRNRERI 300
  301 TFDHLVSMKK PDETALVKVL REGKEHEFSI TLRPLQPLVP VHQFDQLPSY YIFAGFVFVP 360
  361 LTQPYLHEYG EDWYNTSPRT LCHRALKDLP KKAGQQLVIV SQVLMDDINT GYERLAELQV 420
  421 NKVNGVEVNN LRHLCQLIEN CNTEKLRIDL DDESRVIVLN YQSAKIATSL ILKRHRIASA 480
  481 ISSDLLIEQN LETELASCSA V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.30103
Match:	1ky9A
Description:	Protease Do (DegP, HtrA), C-terminal domains; Protease Do (DegP, HtrA), catalytic domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits