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View Structure Prediction Details

Protein: UBA1C_ARATH
Organism: Arabidopsis thaliana
Length: 613 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBA1C_ARATH.

Description E-value Query
Range
Subject
Range
gi|73947291 - gi|73947291|ref|XP_541354.2| PREDICTED: similar to Zinc finger protein 606 (Zinc finger protein 328)...
465.0 [0..2] [334..2518]
gi|76651068 - gi|76651068|ref|XP_887912.1| PREDICTED: similar to zinc finger protein 192 isoform 5 [Bos taurus]
430.0 [0..2] [447..376]
gi|109125970 - gi|109125970|ref|XP_001115785.1| PREDICTED: similar to zinc finger protein 665 [Macaca mulatta]
429.0 [0..2] [420..292]
gi|2224593 - gi|2224593|dbj|BAA20784.1| KIAA0326 [Homo sapiens]
421.0 [0..2] [420..206]

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Predicted Domain #1
Region A:
Residues: [1-193]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWFQCDDCG ENLKKPRLPR HMSMCTATKF SCIDCGNMFG QVSVHYHNQC ITEAEKYGPM  60
   61 VRSNGESSKQ KHDFDINAEL FNSQWFCSLC NATMTCEQDY FAHVYGKKHQ EKANEVADMD 120
  121 YSKQQSEHPA VDKNNLTQQP DLDIYVGLSN DYPWFCSLCD INATSEQTLL AHANGKKHRV 180
  181 KVERFDAEQQ KRQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.30103
Match: 2i13A
Description: No description for 2i13A was found.

Predicted Domain #2
Region A:
Residues: [194-314]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STQHSTVDKK DYSKQQIEVD INVGLSNCYP WFCSLCNVKA TCQQNLLSHA NGRKHRENVE  60
   61 LFDATQQQQL EKTTVDKKDT TVNASDGNSE QKKVDLLVSS GVANGYSQAH KKRKLETCDE 120
  121 T

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.22
Match: 1zu1A
Description: Solution Structure of the N-terminal Zinc Fingers of the Xenopus laevis double stranded RNA binding protein ZFa
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [315-404]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WKREVVQAEE AKGGGEQKSE SKKAKKQDKE KKRKKDKKQT KSDSDFEHDK EDIKQLLVAY  60
   61 SKEELVNLIY KTAEKGSRLI SAILESADRD 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.511 a.24.10 Histidine-containing phosphotransfer domain, HPT domain
View Download 0.374 a.150.1 Anti-sigma factor AsiA
View Download 0.362 a.158.1 F-box domain
View Download 0.293 a.29.16 Description not found.
View Download 0.280 a.24.10 Histidine-containing phosphotransfer domain, HPT domain
View Download 0.257 a.74.1 Cyclin-like
View Download 0.254 a.22.1 Histone-fold
View Download 0.205 c.55.6 DNA repair protein MutS, domain II

Predicted Domain #4
Region A:
Residues: [405-613]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IAQRNIFVRG FGWDTTQENL KTAFESYGEI EECSVVMDKD TGRGKGYGFV MFKTRKGARE  60
   61 ALKRPEKRMY NRIVVCNLAS EKPGKAGKEQ DMAEPVNIDL TKMANQSEAV LPGIELGRGH 120
  121 VLEKMHHQQQ QTMDMFGQNM PFYGYSHQFP GFDPMYGALS GNQMLAGLPN YGMFGSGMMT 180
  181 NQGSMLPPPN HLGMAGQYFG DGEQAWHQR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.69897
Match: 1pgzA
Description: Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle