| Protein: | gi|8778530, gi|2... |
| Organism: | Arabidopsis thaliana |
| Length: | 323 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|8778530, gi|2....
| Description | E-value | Query Range |
Subject Range |
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215.0 | [0..15] | [243..1] |
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213.0 | [0..15] | [270..1] |
|
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211.0 | [0..15] | [270..1] |
|
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211.0 | [0..15] | [270..1] |
|
|
211.0 | [0..6] | [271..2] |
|
|
211.0 | [0..15] | [271..1] |
|
|
210.0 | [0..15] | [241..1] |
|
Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MQSSNVTDCT MRKRGTKRKI EIEKRMTKQQ RSVACSKRRP TLFSKAADLC LLSGANIAVF 60
61 VTSPDENSDV VYSFSGYSHA SEIVDCYLNN KSPPKTTINP ESA
|
| Detection Method: |  |
| Confidence: | 24.0 |
| Match: | 1tqeP |
| Description: | Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [104-248] |
1 11 21 31 41 51
| | | | | |
1 KFWWEEPDLY RDCDDLSELR IIEDRLMRTK KHLMDYLEKK EKSHSVSKSD QNPNNDSGSS 60
61 SSSSQIASDF GQNPSTLSPS SLKIVSFDQN SYSSLEPSSQ VTTCFDQNPV FSVGSESSSD 120
121 QSRYLVNEDS GFVDGLLCET EEENN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.514 | N/A | N/A | a.25.2 | Thermoplasma ferritin-like 4-helical bundle |
| View | Download | 0.288 | N/A | N/A | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.269 | N/A | N/A | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.268 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.268 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
|
Region A: Residues: [249-323] |
1 11 21 31 41 51
| | | | | |
1 GMRLPQETQT QPMFTEEDQS FWENLDVDDV FGLFKDDNNL EVPLQDHSST NEDDELLIDI 60
61 SEYLSEEAME CPCFS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.593 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.593 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.506 | a.60.8 | HRDC-like |
| View | Download | 0.503 | a.4.1 | Homeodomain-like |
| View | Download | 0.496 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.488 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.434 | c.10.2 | L domain-like |
| View | Download | 0.415 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.414 | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
