| Protein: | UBP21_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 732 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP21_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
406.0 | [0..1] | [732..1] |
|
|
316.0 | [0..9] | [729..70] |
|
|
316.0 | [0..36] | [729..2] |
|
|
307.0 | [0..9] | [729..44] |
|
|
298.0 | [0..36] | [729..2] |
|
|
295.0 | [0..36] | [601..2] |
|
Region A: Residues: [1-89] |
1 11 21 31 41 51
| | | | | |
1 MAEFSDPPPS NLSSSHKLTK PNQTLDESSP TAPIRDLVTN SLSLSSPIRQ IQALSPAKPD 60
61 GSSSSPPDKT LNFNPEENRD VNPDESSSS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [90-473] |
1 11 21 31 41 51
| | | | | |
1 PSDKTLIAPP AQISPVSNNN HLRITNTSDS YLYRPPRRYI EYESDDDELN KMEPTKPLQL 60
61 SWWYPRIEPT GVGAGLYNSG NTCFIASVLQ CFTHTVPLID SLRSFMYGNP CNCGNEKFCV 120
121 MQALRDHIEL ALRSSGYGIN IDRFRDNLTY FSSDFMINHQ EDAHEFLQSF LDKLERCCLD 180
181 PKNQLGSVSS QDLNIVDNVF GGGLMSTLCC CNCNSVSNTF EPSLGWSLEI EDVNTLWKAL 240
241 ESFTCVEKLE DQLTCDNCKE KVTKEKQLRF DKLPPVATFH LKRFTNDGVT MEKIFDHIEF 300
301 PLELDLSPFM SSNHDPEVST RYHLYAFVEH IGIRATFGHY SSYVRSAPET WHNFDDSKVT 360
361 RISEERVLSR PAYILFYARE GTPW
|
| Detection Method: | |
| Confidence: | 61.522879 |
| Match: | 2gfoA |
| Description: | No description for 2gfoA was found. |
|
Region A: Residues: [474-558] |
1 11 21 31 41 51
| | | | | |
1 FSSTFEQLKT VFEATPLHFS PVSVLDNSYE SVDNSSKACN DSVGVSIPDV KWPDSCCQEP 60
61 KEEVFHSAES SNNEDSSAMI DALGS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.515 | a.118.1 | ARM repeat |
| View | Download | 0.333 | a.29.14 | Description not found. |
| View | Download | 0.322 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.283 | d.45.1 | ClpS-like |
| View | Download | 0.250 | d.93.1 | SH2 domain |
| View | Download | 0.242 | a.8.11 | Description not found. |
| View | Download | 0.240 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.210 | d.58.19 | Bacterial exopeptidase dimerisation domain |
| View | Download | 0.203 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.203 | a.24.17 | Group V grass pollen allergen |
|
Region A: Residues: [559-732] |
1 11 21 31 41 51
| | | | | |
1 PQSEKPFAET SQQTEPESCP TENKAYIDKS EKPFAETSQP KEPKPFADRA SIDAPLLKVQ 60
61 NQDISPKRKA GERATLGGPK LKYQKPNSHQ KRQGTFQIQR AHLQTKKQEE SRKTKRPLFR 120
121 SNVAASAPDP KYKNHALSYL NRAQTPRARK LANALSDSPT KKKKSSNMRR SIKL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
