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View Structure Prediction Details

Protein: DNJ19_ARATH
Organism: Arabidopsis thaliana
Length: 346 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DNJ19_ARATH.

Description E-value Query
Range
Subject
Range
DNAJ_RHIRD - Chaperone protein DnaJ OS=Rhizobium radiobacter GN=dnaJ PE=1 SV=1
350.0 [0..22] [344..1]

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Predicted Domain #1
Region A:
Residues: [1-134]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIRWSELCI VLFALSYAIC VLAGKSYYDV LQVPKGASDE QIKRAYRKLA LKYHPDKNQG  60
   61 NEEATRKFAE INNAYEVLSD EEKREIYNKY GEEGLKQFSA NGGRGGGGGG MNMQDIFSSF 120
  121 FGGGSMEEEE KVVK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.522879
Match: 1xblA
Description: NMR STRUCTURE OF THE J-DOMAIN (RESIDUES 2-76) IN THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 2-108) OF THE MOLECULAR CHAPERONE DNAJ, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
unfolded protein binding 3.04403163860617 bayes_pls_golite062009
binding 2.63138872417193 bayes_pls_golite062009
heat shock protein binding 2.17994194200939 bayes_pls_golite062009
transcription regulator activity 1.91297632253219 bayes_pls_golite062009
nucleic acid binding 1.6342534817623 bayes_pls_golite062009
chaperone binding 1.61155546076854 bayes_pls_golite062009
protein binding 1.60937254813642 bayes_pls_golite062009
DNA binding 1.55234338199368 bayes_pls_golite062009
Hsp70 protein binding 0.541755903922701 bayes_pls_golite062009
transferase activity 0.240656521918556 bayes_pls_golite062009
catalytic activity 0.106988907594358 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.0276971914937192 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [135-346]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDDVIVELEA TLEDLYMGGS MKVWREKNVI KPAPGKRKCN CRNEVYHRQI GPGMFQQMTE  60
   61 QVCDKCPNVK YEREGYFVTV DIEKGMKDGE EVSFYEDGEP ILDGDPGDLK FRIRTAPHAR 120
  121 FRRDGNDLHM NVNITLVEAL VGFEKSFKHL DDHEVDISSK GITKPKEVKK FKGEGMPLHY 180
  181 STKKGNLFVT FEVLFPSSLT DDQKKKIKEV FA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.221849
Match: 1nltA
Description: The crystal structure of Hsp40 Ydj1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.7298921704023 bayes_pls_golite062009
protein disulfide isomerase activity 2.4409950647303 bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing S-S bonds 2.4409950647303 bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting keto- and enol-groups 2.23398279564144 bayes_pls_golite062009
unfolded protein binding 2.04158808514315 bayes_pls_golite062009
protein binding 1.57926302986794 bayes_pls_golite062009
catalytic activity 0.276917867171685 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle