| Protein: | HDG9_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 718 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HDG9_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
766.0 | [0..1] | [718..1] |
|
|
760.0 | [0..2] | [718..80] |
|
|
759.0 | [0..2] | [718..87] |
|
|
740.0 | [0..10] | [718..41] |
|
|
735.0 | [0..2] | [718..64] |
|
|
734.0 | [0..2] | [718..77] |
|
Region A: Residues: [1-117] |
1 11 21 31 41 51
| | | | | |
1 MDFTRDDNSS DERENDVDAN TNNRHEKKGY HRHTNEQIHR LETYFKECPH PDEFQRRLLG 60
61 EELNLKPKQI KFWFQNKRTQ AKSHNEKADN AALRAENIKI RRENESMEDA LNNVVCP
|
| Detection Method: |  |
| Confidence: | 18.39794 |
| Match: | 1fjlA |
| Description: | Paired protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [118-220] |
1 11 21 31 41 51
| | | | | |
1 PCGGRGPGRE DQLRHLQKLR AQNAYLKDEY ERVSNYLKQY GGHSMHNVEA TPYLHGPSNH 60
61 ASTSKNRPAL YGTSSNRLPE PSSIFRGPYT RGNMNTTAPP QPR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [221-479] |
1 11 21 31 41 51
| | | | | |
1 KPLEMQNFQP LSQLEKIAML EAAEKAVSEV LSLIQMDDTM WKKSSIDDRL VIDPGLYEKY 60
61 FTKTNTNGRP ESSKDVVVVQ MDAGNLIDIF LTAEKWARLF PTIVNEAKTI HVLDSVDHRG 120
121 KTFSRVIYEQ LHILSPLVPP REFMILRTCQ QIEDNVWMIA DVSCHLPNIE FDLSFPICTK 180
181 RPSGVLIQAL PHGFSKVTWI EHVVVNDNRV RPHKLYRDLL YGGFGYGARR WTVTLERTCE 240
241 RLIFSTSVPA LPNNDNPGV
|
| Detection Method: | |
| Confidence: | 3.68 |
| Match: | 2r55A |
| Description: | No description for 2r55A was found. |
|
Region A: Residues: [480-602] |
1 11 21 31 41 51
| | | | | |
1 VQTIRGRNSV MHLGERMLRN FAWMMKMVNK LDFSPQSETN NSGIRIGVRI NNEAGQPPGL 60
61 IVCAGSSLSL PLPPVQVYDF LKNLEVRHQW DVLCHGNPAT EAARFVTGSN PRNTVSFLEP 120
121 SIR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.663 | d.110.4 | SNARE-like |
| View | Download | 0.615 | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.581 | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.577 | d.65.1 | Hedgehog/DD-pepidase |
| View | Download | 0.555 | d.110.4 | SNARE-like |
| View | Download | 0.470 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.463 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.463 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.456 | d.110.4 | SNARE-like |
|
Region A: Residues: [603-718] |
1 11 21 31 41 51
| | | | | |
1 DINTKLMILQ DSFKDALGGM VAYAPMDLNT ACAAISGDID PTTIPILPSG FMISRDGRPS 60
61 EGEAEGGSYT LLTVAFQILV SGPSYSPDTN LEVSATTVNT LISSTVQRIK AMLKCE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.800 | N/A | N/A | a.24.20 | Description not found. |
| View | Download | 0.687 | N/A | N/A | a.60.8 | HRDC-like |
| View | Download | 0.671 | N/A | N/A | a.24.21 | Description not found. |
| View | Download | 0.671 | N/A | N/A | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.627 | N/A | N/A | d.85.1 | RNA bacteriophage capsid protein |
| View | Download | 0.627 | N/A | N/A | d.85.1 | RNA bacteriophage capsid protein |
| View | Download | 0.607 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.532 | N/A | N/A | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.494 | N/A | N/A | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.476 | N/A | N/A | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
