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View Structure Prediction Details

Protein: gi|10177831, gi|...
Organism: Arabidopsis thaliana
Length: 350 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|10177831, gi|....

Description E-value Query
Range
Subject
Range
gi|15223097 - gi|15223097|ref|NP_172285.1| carbonate dehydratase/ zinc ion binding [Arabidopsis thaliana]
256.0 [0..131] [341..12]

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Predicted Domain #1
Region A:
Residues: [1-139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISSLGWVL VLIFISITIV SSAPAPKPPK PKPAPAPTPP KPKPTPAPTP PKPKPKPAPT  60
   61 PPKPKPAPAP TPPKPKPAPA PTPPKPKPKP APTPPNPKPT PAPTPPKPKP APAPAPTPAP 120
  121 KPKPAPKPAP GGEVEDETE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.74
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [140-350]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSYETKGNKG PAKWGTLDAE WKMCGIGKMQ SPIDLRDKNV VVSNKFGLLR SQYLPSNTTI  60
   61 KNRGHDIMLK FKGGNKGIGV TIRGTRYQLQ QLHWHSPSEH TINGKRFALE EHLVHESKDK 120
  121 RYAVVAFLYN LGASDPFLFS LEKQLKKITD THASEEHIRT VSSKQVKLLR VAVHDASDSN 180
  181 ARPLQAVNKR KVYLYKPKVK LMKKYCNISS Y

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.30103
Match: 1kopA
Description: Carbonic anhydrase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
zinc ion binding 1.2395720116639 bayes_pls_golite062009
binding 0.496831118350189 bayes_pls_golite062009
transition metal ion binding 0.36067052386032 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle