YRC Public Data Repository - Protein Structure Prediction

Protein:	SMG7L_ARATH
Organism:	Arabidopsis thaliana
Length:	880 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMG7L_ARATH.

Description	E-value	Query Range	Subject Range
gi\|28393285 - gi\|28393285\|gb\|AAO42070.1\| unknown protein [Arabidopsis thaliana]	397.0	[0..1]	[880..1]
gi\|58388488, gi\|... - gi\|58388488\|ref\|XP_316319.2\| ENSANGP00000020579 [Anopheles gambiae str. PEST], gi\|55239058\|gb\|EAA107...	319.0	[0..3]	[751..191]
gi\|66347879, gi\|... - gi\|66347879\|ref\|NP_001018117.1\| O-linked N-acetylglucosamine transferase isoform 4 [Danio rerio], gi...	318.0	[0..1]	[756..108]
gi\|91079875 - gi\|91079875\|ref\|XP_967579.1\| PREDICTED: similar to CG10392-PB, isoform B [Tribolium castaneum]	316.0	[0..1]	[751..255]
gi\|76659283 - gi\|76659283\|ref\|XP_885141.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 11 ...	315.0	[0..1]	[743..118]
gi\|66793439, gi\|... - gi\|66793439\|ref\|NP_001019747.1\| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase [Xe...	314.0	[0..1]	[751..108]
gi\|110760723 - gi\|110760723\|ref\|XP_623820.2\| PREDICTED: similar to O-glycosyltransferase CG10392-PB, isoform B [Api...	314.0	[0..1]	[751..167]
gi\|74007686 - gi\|74007686\|ref\|XP_538075.2\| PREDICTED: similar to O-linked GlcNAc transferase isoform 2 isoform 1 [...	312.0	[0..1]	[743..108]

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Predicted Domain #1

Region A:
Residues: [1-505]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEANSADQKQ KPNFLVEVNN IEKQLWTLIH SKTILHTDVS ELYAKAGSTY EQIFKSNLQH  60
   61 EELQEVEFCL WKLHYKHIDE FRKGLKTNDH AKHMKAFKLF LSKAAEFYQN LISKVRGYYH 120
  121 RLSEESGEQK SRFLCHRFYI CLGDLQRYQE QYLKAHEHPN WSTAATYYLE AAKSWPDSGN 180
  181 PHNQLAVLAT YVSDELLALY HCVRSLAVKE PFPGASNNLL LLFEKNRSSP LQSLSTDAEF 240
  241 NYLNPSEKKV SVKERDLSKA KGELVAGIDL WPLVVRTTSF FFLKSSFDEF GRAFASTIRE 300
  301 LDAAFAADDR NLEAMLESYQ FMDTARKGPY KILQIVAVFI YIFHNLAEAN GSDIVKEEVK 360
  361 LTNLALTMVF IVMGRVVERC LKTTPLDSCP LLPALLVFLD YLPFLLDKVE EEEEECRFDE 420
  421 KSKSAISYFF GKLVDILNQL KVKDKNCPAK TLLALWEDHE LKSLAPLAPI HALLDFSSNM 480
  481 DLRESFDRGK ELRLQRIISS AIDIT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.39794
Match:	1ya0A
Description:	Crystal structure of the N-terminal domain of human SMG7
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [506-880]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRQKKGSQKW LFFDNQRTHF YTTSGELQSN GELFHGNGEG RNRKCVTIGP VEIIPLENER  60
   61 SVPVEEEEVI LLKPLVRCQS APIYSSGIAA KPLSSDCTTS GNQTTTSNDS LRRTLSLIGS 120
  121 ESFSFTQGLK DTDPQHLHLE EGTVSGRPPS LSAWVVDKNK EKGRLGLSKP NGLGPIDETG 180
  181 PVSAFDSLSI NSSTEHPASS YSPPTPSAPL LPEDASWFHN DASTNKAESF YDQTRYMELP 240
  241 GIMKPYTNPP FVGISSSEWL RRYRESRNLG PAYSYQAQGT NNLRNFMAHG SSKFSLLARY 300
  301 GTPNDSSQNS TFHPQLYMED HESRGEKLGN VQQSTTNPYG FSDDPGPFLR FLREKEWLNE 360
  361 NGQRLRGPPP AYMNN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.0
Match:	1y0fB
Description:	No description for 1y0fB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits