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View Structure Prediction Details

Protein: gi|7270786, gi|1...
Organism: Arabidopsis thaliana
Length: 649 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7270786, gi|1....

Description E-value Query
Range
Subject
Range
gi|115477737, gi... - gi|115477737|ref|NP_001062464.1| Os08g0554100 [Oryza sativa (japonica cultivar-group)], gi|113624433...
830.0 [0..16] [649..6]

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Predicted Domain #1
Region A:
Residues: [1-649]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSQKKIASL FICFLLLLLL PLSFSKPTRN LDGISARAPT VQQIRSRHHG TREVIVDNGI  60
   61 IRVSFSNPQG LITGIKYKGI DNVLHPHLRD RGIEGTNFRI ITQTQEQVEI SFSRTWEDGH 120
  121 IPLNVDKRYI IRRNTSGIYM YGIFERLPEW PELDMGLIRI AFKLNPERFH YMAVADNRQR 180
  181 EMPTEDDRDI KRGHAKALGY KEAVQLTHPH NSMFKNQVDD KYQYTCEIKD NKVHGWISTK 240
  241 SRVGFWIISP SGEYRSGGPI KQELTSHVGP TAITTFISGH YVGADMEAHY RPGEAWKKVL 300
  301 GPVFIYLNSD STSNNKPQDL LWEDAKQQSE KEVKAWPYDF VASSDYLSRR ERGSVTGRLL 360
  361 VNDRFLTPGK SAYVGLAPPG EAGSWQTNTK GYQFWTKTNE TGYFTIENVR PGTYNLYGWV 420
  421 PGFIGDFRYQ NLVNVAAGSV ISLGRVVYKP PRNGPTLWEI GVPDRTAREY FIPEPYKDTM 480
  481 NPLYLNHTDK FRQYGLWQRY TELYPTHDLV YTVGVSNYSQ DWFYAQVTRK TGDLTYVPTI 540
  541 WQIVFHLPYV NSRGSYTLQV ALASAAWANL QVRINNQNSW PFFSTGTIGK DNAIARHGIH 600
  601 GMYRLYTIDV PGRLLRTGTN TIYLRQPKAQ GPFEGLMYDY IRLEEPSRA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 140.0
Match: 1nkgA
Description: Rhamnogalacturonan lyase from Aspergillus aculeatus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.24087518312023 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle