YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9759544, gi\|1...
Organism:	Arabidopsis thaliana
Length:	66 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9759544, gi|1....

Description	E-value	Query Range	Subject Range
gi\|18416828, gi\|... - gi\|18416828\|ref\|NP_568261.1\| RNA binding [Arabidopsis thaliana], gi\|14586358\|emb\|CAC42889.1\| putativ...	125.0	[0..1]	[66..347]
gi\|92898663 - gi\|92898663\|gb\|ABE94283.1\| SWAP/Surp; Ubiquitin [Medicago truncatula]	95.0	[0..2]	[65..722]
gi\|115445277, gi... - gi\|50251803\|dbj\|BAD27734.1\| putative splicing factor 3a [Oryza sativa Japonica Group], gi\|125581463\|...	73.0	[0..2]	[65..710]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSVPDVNDG QVIEITVQSL SENVASLKEK VANKLKLRGK AGILKDDDKS LAHYNVRAGD  60
   61 ILTLSW

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Detection Method:	PSI-BLAST
Confidence:	26.30103
Match:	1we6A
Description:	Solution structure of Ubiquitin-like domain in splicing factor AAL91182
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits