YRC Public Data Repository - Protein Structure Prediction

Protein:	R35A3_ARATH
Organism:	Arabidopsis thaliana
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for R35A3_ARATH.

Description	E-value	Query Range	Subject Range
R35A1_ARATH - 60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1	179.0	[0..1]	[112..1]
gi\|13430186 - gi\|13430186\|gb\|AAK25760.1\|AF334840_1 ribosomal protein L33 [Castanea sativa]	178.0	[0..1]	[112..1]
gi\|125553257 - gi\|125553257\|gb\|EAY98966.1\| hypothetical protein OsI_20924 [Oryza sativa Indica Group] gi\|113579835, gi... - gi\|50932737\|ref\|XP_475896.1\| putative ribosomal protein L35A [Oryza sativa (japonica cultivar-group)...	174.0	[0..2]	[112..1]
RL35A_RAT - 60S ribosomal protein L35a OS=Rattus norvegicus GN=Rpl35a PE=3 SV=1 RL35A_MOUSE - 60S ribosomal protein L35a OS=Mus musculus GN=Rpl35a PE=1 SV=2 tr\|G1SF08\|G1SF08... - pep:novel chromosome:oryCun2:14:93169690:93172758:1 gene:ENSOCUG00000001232 transcript:ENSOCUT000000...	174.0	[0..9]	[112..2]
gi\|60831600 - gi\|60831600\|gb\|AAX36977.1\| ribosomal protein L35a [synthetic construct]	173.0	[0..9]	[112..2]
gi\|226496477, gi... - gi\|99866715\|gb\|ABF67929.1\| ribosomal protein L35A [Zea mays], gi\|226496477\|ref\|NP_001148377.1\| 60S r...	172.0	[0..1]	[112..1]
gi\|114591394 - gi\|114591394\|ref\|XP_001167427.1\| PREDICTED: similar to Ribosomal protein L35a isoform 4 [Pan troglod...	172.0	[0..9]	[112..39]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKGRQGERV RLYVRGTILG YKRSKSNQYP NTSLVQIEGV NTQEEVNWYK GKRMAYIYKA  60
   61 KTKKNGSHYR CIWGKVTRPH GNSGVVRAKF TSNLPPKSMG SRVRVFMYPS NI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.30103
Match:	1sqrA
Description:	Solution Structure of the 50S Ribosomal Protein L35AE from Pyrococcus furiosus. Northeast Structural Genomics Consortium Target PfR48.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits