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Protein Overview: gi|125553257

General Information:
Name(s) found: gi|125553257 [NCBI NR]
Description(s) found:
  • gi|125553257|gb|EAY98966.1| hypothetical protein OsI_20924 [Oryza sativa Indica Group] [NCBI NR]
    • Organism: Oryza sativa Indica Group
    Length: 111 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGRQGQRVR LYVRGTILGY KRSKSNQYEN TSLLQIEGVN TKEEVGWYAG KRIAYVYKAK  60
   61 TKSNDSTIRC IWGKVTRPHG NSGVVRAKFR SNLPPTSMGK KVRVFMYPSS I

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..111] PSI-BLAST 21.69897 Solution Structure of the 50S Ribosomal Protein L35AE from Pyrococcus furiosus. Northeast Structural Genomics Consortium Target PfR48.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  8.74976995123472 bayes_pls_golite062009
  • structural molecule activity
    		•  8.17182185344538 bayes_pls_golite062009
  • translation initiation factor activity
    		•  2.68619850021832 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.39500449599674 bayes_pls_golite062009
  • RNA binding
    		•  2.33551163092904 bayes_pls_golite062009
  • translation regulator activity
    		•  2.20347076721097 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  2.18748808024313 bayes_pls_golite062009
  • binding
    		•  1.82018436093208 bayes_pls_golite062009
  • peptidyltransferase activity
    		•  1.25473146071242 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.588710983191844 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.588710983191844 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.587833689405549 bayes_pls_golite062009
  • ligase activity
    		•  0.179232439709325 bayes_pls_golite062009
  • protein binding
    		•  0.142220848362339 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle