YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7487679, gi\|7...
Organism:	Arabidopsis thaliana
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7487679, gi|7....

Description	E-value	Query Range	Subject Range
gi\|2829876, gi\|1... - pir\|\|T00654 hypothetical protein F3I6.17 - Arabidopsis thaliana, gi\|2829876\|gb\|AAC00584.1\| Unknown ...	253.0	[0..1]	[225..1]
RL19_BRADU - 50S ribosomal protein L19 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 1479... RL19_BRAJA - 50S ribosomal protein L19 OS=Bradyrhizobium japonicum GN=rplS PE=3 SV=1	182.0	[0..113]	[224..1]
RK19_SPIOL - 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2	180.0	[0..16]	[223..30]
RL19_BRASB - 50S ribosomal protein L19 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplS PE=3 SV=1	178.0	[0..113]	[224..1]
gi\|85698904, gi\|... - gi\|85714457\|ref\|ZP_01045445.1\| 50S ribosomal protein L19 [Nitrobacter sp. Nb-311A], gi\|85698904\|gb\|E...	178.0	[0..112]	[224..4]
RL19_RHOP2 - 50S ribosomal protein L19 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplS PE=3 SV=1 RL19_RHOPS - 50S ribosomal protein L19 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplS PE=3 SV=1	177.0	[0..113]	[224..1]
rplS, L19 - rplS, L19 50s ribosomal protein L19 266732:267121 reverse MW:14297 RL19_RHOPT - 50S ribosomal protein L19 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplS PE=3 SV=1 RL19_RHOPA - 50S ribosomal protein L19 OS=Rhodopseudomonas palustris GN=rplS PE=1 SV=1	176.0	[0..113]	[224..1]
RL19_NITHX - 50S ribosomal protein L19 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplS PE=3 SV=1	176.0	[0..113]	[224..1]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSIRGSTRL LQRHRFSISN TLRFTSSSSC GSWSENESRK LGFDSCPSSR AATYLISSLK  60
   61 NAGFSSSAIP KQNFTYASRC FSTTGDSSVQ GSPESDCVVP QRIKFKR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [108-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDKTAKHIMQ IVDKEAVEEV RSLREIPEIK PGYIVQLKVE VPENKRRVSI VKGVVIARRN  60
   61 AGLNSTFRIR RLVAGVGVES MFPLYSPNLR EIKVVDKKKV RRAKLYYLRD KVNALKKH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	1vs6P
Description:	No description for 1vs6P was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits