YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7487679, gi\|7...
Organism:	Arabidopsis thaliana
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7487679, gi|7....

Description	E-value	Query Range	Subject Range
gi\|2829876, gi\|1... - pir\|\|T00654 hypothetical protein F3I6.17 - Arabidopsis thaliana, gi\|2829876\|gb\|AAC00584.1\| Unknown ...	253.0	[0..1]	[225..1]
RL19_BRADU - 50S ribosomal protein L19 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 1479... RL19_BRAJA - 50S ribosomal protein L19 OS=Bradyrhizobium japonicum GN=rplS PE=3 SV=1	182.0	[0..113]	[224..1]
RK19_SPIOL - 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2	180.0	[0..16]	[223..30]
RL19_BRASB - 50S ribosomal protein L19 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplS PE=3 SV=1	178.0	[0..113]	[224..1]
gi\|85698904, gi\|... - gi\|85714457\|ref\|ZP_01045445.1\| 50S ribosomal protein L19 [Nitrobacter sp. Nb-311A], gi\|85698904\|gb\|E...	178.0	[0..112]	[224..4]
RL19_RHOP2 - 50S ribosomal protein L19 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplS PE=3 SV=1 RL19_RHOPS - 50S ribosomal protein L19 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplS PE=3 SV=1	177.0	[0..113]	[224..1]
rplS, L19 - rplS, L19 50s ribosomal protein L19 266732:267121 reverse MW:14297 RL19_RHOPT - 50S ribosomal protein L19 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplS PE=3 SV=1 RL19_RHOPA - 50S ribosomal protein L19 OS=Rhodopseudomonas palustris GN=rplS PE=1 SV=1	176.0	[0..113]	[224..1]
RL19_NITHX - 50S ribosomal protein L19 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplS PE=3 SV=1	176.0	[0..113]	[224..1]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSIRGSTRL LQRHRFSISN TLRFTSSSSC GSWSENESRK LGFDSCPSSR AATYLISSLK  60
   61 NAGFSSSAIP KQNFTYASRC FSTTGDSSVQ GSPESDCVVP QRIKFKR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.343	d.16.1	FAD-linked reductases, C-terminal domain
View	Download	0.309	a.3.1	Cytochrome c
View	Download	0.275	a.3.1	Cytochrome c
View	Download	0.275	a.3.1	Cytochrome c
View	Download	0.253	d.95.2	Homing endonucleases
View	Download	0.247	a.118.8	TPR-like
View	Download	0.222	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.222	a.45.1	Glutathione S-transferase (GST), C-terminal domain

Predicted Domain #2

Region A:
Residues: [108-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDKTAKHIMQ IVDKEAVEEV RSLREIPEIK PGYIVQLKVE VPENKRRVSI VKGVVIARRN  60
   61 AGLNSTFRIR RLVAGVGVES MFPLYSPNLR EIKVVDKKKV RRAKLYYLRD KVNALKKH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	1vs6P
Description:	No description for 1vs6P was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits