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View Structure Prediction Details

Protein: GH312_ARATH
Organism: Arabidopsis thaliana
Length: 575 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GH312_ARATH.

Description E-value Query
Range
Subject
Range
gi|4887010 - gi|4887010|gb|AAD32141.1|AF123503_1 Nt-gh3 deduced protein [Nicotiana tabacum]
777.0 [0..3] [574..14]

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Predicted Domain #1
Region A:
Residues: [1-575]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPIFDINET FEKQLKDLTS NVKSIQDNLL EEIITPNTKT EYLQRFLIDR FDKELFKKNV  60
   61 PIVSYEDIKP YLDRVVNGES SDVISARTIT GFLLSSGTSG GAQKMMPWNN KYLDNLTFIY 120
  121 DLRMQVITKH VKGVEEGKGM MFLFTKQESM TPSGLPARVA TSSYFKSDYF KNRPSNWYYS 180
  181 YTSPDEVILC PNNTESLYCH LLCGLVQRDE VVRTGSIFAS VMVRAIEVLK NSWEELCSNI 240
  241 RSGHLSNWVT DLGCQNSVSL VLGGPRPELA DTIEEICNQN SWKGIVKRLW PNTKYIETVV 300
  301 TGSMGQYVPM LNYYCNDLPL VSTTYGSSET TFGINLDPLC KPEDVSYTFM PNMSYFEFIP 360
  361 MDGGDKNDVV DLEDVKLGCT YEPVVTNFAG LYRMRVGDIV LVTGFYNNAP QFKFVRRENV 420
  421 VLSIDSDKTN EEDLFKAVSQ AKLVLESSGL DLKDFTSYAD TSTFPGHYVV YLEVDTKEGE 480
  481 EKETAQFELD EEALSTCCLV MEESLDNVYK RCRFKDGSIG PLEIRVVRQG TFDSLMDFFI 540
  541 SQGASTGQYK TPRCIKSGKA LQVLETCVVA KFFSI

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.48
Match: 1amuA
Description: Phenylalanine activating domain of gramicidin synthetase 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.1635513199224 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle