YRC Public Data Repository - Protein Structure Prediction

Protein:	C3H14_ARATH
Organism:	Arabidopsis thaliana
Length:	310 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C3H14_ARATH.

Description	E-value	Query Range	Subject Range
gi\|169764591 - gi\|169764591\|ref\|XP_001816767.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83764621 - gi\|83764621\|dbj\|BAE54765.1\| unnamed protein product [Aspergillus oryzae]	156.0	[0..16]	[300..58]
gi\|159125538 - gi\|159125538\|gb\|EDP50655.1\| CCCH zinc finger and SMR domain protein [Aspergillus fumigatus A1163] gi\|66849163, gi\|... - gi\|70993364\|ref\|XP_751529.1\| CCCH zinc finger and SMR domain protein [Aspergillus fumigatus Af293], ...	156.0	[0..16]	[300..58]
gi\|76657145 - gi\|76657145\|ref\|XP_596209.2\| PREDICTED: similar to Zinc finger protein 183 (RING finger protein 113)...	155.0	[0..13]	[301..12]
gi\|40740596, gi\|... - gi\|67526241\|ref\|XP_661182.1\| hypothetical protein AN3578.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	154.0	[0..16]	[300..58]
gi\|90305647, gi\|... - gi\|90305647\|gb\|EAS35278.1\| hypothetical protein CIMG_00632 [Coccidioides immitis RS], gi\|119192510\|r...	152.0	[0..20]	[300..62]
gi\|74144555 - gi\|74144555\|dbj\|BAE36112.1\| unnamed protein product [Mus musculus]	152.0	[0..29]	[301..25]
gi\|57997172 - gi\|57997172\|emb\|CAI46182.1\| hypothetical protein [Homo sapiens] ENSMMUT000000468... - null, null	152.0	[0..42]	[270..211]
gi\|73968163 - gi\|73968163\|ref\|XP_864051.1\| PREDICTED: similar to roquin isoform 3 [Canis familiaris]	150.0	[0..42]	[264..224]
gi\|50757133 - gi\|50757133\|ref\|XP_415394.1\| PREDICTED: similar to membrane-associated nucleic acid binding protein ...	150.0	[0..42]	[279..211]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLAASTVT DLACVTAINS SPPPLSPISE QSFNNKHQEE FAASFASLYN SIFSPESLSP  60
   61 SPPSSSSPPS RVDTTTEHRL LQAKLILEYD ELNEHYELCL NRLQSLMTEL DSLRHENDSL 120
  121 RFENSDLLKL IRISTSSSSS VSPPAPIHNR QFRHQISDS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [160-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSAKRNNQER NSLPKSISVR SQGYLKINHG FEASDLQTSQ LSSNSVSSSQ KVCVVQTKGE  60
   61 REALELEVYR Q

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [231-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GMMKTELCNK WQETGACCYG DNCQFAHGID ELRPVIRHPR YKTEVCRMMV TGAMCPYGHR  60
   61 CHFRHSLTDQ ERMMMMMLTR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.522879
Match:	1rgoA
Description:	Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits