YRC Public Data Repository - Protein Structure Prediction

Protein:	NP93A_ARATH
Organism:	Arabidopsis thaliana
Length:	861 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NP93A_ARATH.

Description	E-value	Query Range	Subject Range
gi\|114662650 - gi\|114662650\|ref\|XP_510982.2\| PREDICTED: nucleoporin 93kDa [Pan troglodytes]	815.0	[0..2]	[860..100]
gi\|40788963 - gi\|40788963\|dbj\|BAA07680.2\| KIAA0095 [Homo sapiens]	801.0	[0..2]	[860..11]
gi\|18606331 - gi\|18606331\|gb\|AAH23140.1\| Nucleoporin 93 [Mus musculus]	798.0	[0..5]	[860..1]
gi\|73949816 - gi\|73949816\|ref\|XP_535293.2\| PREDICTED: similar to Nuclear pore complex protein Nup93 (Nucleoporin N...	797.0	[0..5]	[860..1]
NUP93_RAT - Nuclear pore complex protein Nup93 OS=Rattus norvegicus GN=Nup93 PE=1 SV=1	793.0	[0..5]	[860..1]
gi\|115388875, gi... - gi\|115388875\|ref\|XP_001211943.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	793.0	[0..10]	[860..79]
gi\|207080222 - gi\|207080222\|ref\|NP_001128848.1\| DKFZP469K1320 protein [Pongo abelii] gi\|55730735 - gi\|55730735\|emb\|CAH92088.1\| hypothetical protein [Pongo abelii]	792.0	[0..5]	[860..1]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANDQEMSGW TDLLHSSSKL LEQAAPSSQF PPLQRNLDQL EALSKKLKAK TLRNEAPSQS  60
   61 IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATS VEEYLQQVHE MAMVSAIQEA 120
  121 QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [157-861]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPKTNMIDTS REAHAGQLVP VGSSPRVSST PGKELVALAN IPIHEKKAYV YGEVVKKLNT  60
   61 SRERGMPFRP AMCFKDAYDT LGAEVTRGKS VNMQKIWQLV QAITGEDSAV RQGVSKRMAL 120
  121 AIGARHHLQH GHEKFIMDTI QTHPTQAALG GSVGNLQRIR AFLRIRLRDY GVLDFDSTDA 180
  181 RRQPPVDTTW QQIYFCLRTG YYEEAREIAR STRSSQQFAP LLTEWITTDG MVAAESAAIA 240
  241 SEECEKMLRM GDRLGRTAYD KKKLLLYTII SGSRRQIERI LRDLSTLFNT IEDFLWFKLS 300
  301 CIRDVTGGSS SVVLNDGLAP YSLDDLQAYL NKFEPSYYTK NGKDPLVYPY VLLLSVQLLP 360
  361 AIMHLSKEAG DGGYNIDAVH IAISLVDHSV LSEGSGTGHK LSVMDSNAEA SSMIRQYGSM 420
  421 FLHHGDLQMT VEYYAQAAAT VGGGQLAWSG RSNVDQQRQR NLMLKQLLTE ILLRERGIYF 480
  481 LLGARGSGEE GQLGRFFPDS RLRQQFLVEA AHQCQEAGLY DKSIELQKRV GAFSAALETI 540
  541 NKCLSEAICS LARGRLDGES RTSGLILAGN DILETYKYYP EVSLQERERV MEQETILREL 600
  601 EAILSIHKLG RLGNHLDALR EIAKLPFLHL DPRMPDATAD VFQSASPYFQ TCVPDLLKVA 660
  661 LTCLDNVPDT DGSIRAMRSK IAGFLASNTH RNWPRDLYEK VARSF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	158.0
Match:	2qx5A
Description:	No description for 2qx5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits