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View Structure Prediction Details

Protein: WRK60_ARATH
Organism: Arabidopsis thaliana
Length: 271 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WRK60_ARATH.

Description E-value Query
Range
Subject
Range
gi|17980964 - gi|17980964|gb|AAL50787.1|AF452177_1 WRKY transcription factor 60 [Arabidopsis thaliana]
267.0 [0..1] [271..1]

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Predicted Domain #1
Region A:
Residues: [1-108]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYDPNTNPF DLHFSGKLPK REVSASASKV VEKKWLVKDE KRNMLQDEIN RVNSENKKLT  60
   61 EMLARVCEKY YALNNLMEEL QSRKSPESVN FQNKQLTGKR KQELDEFV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [109-271]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSPIGLSLGP IENITNDKAT VSTAYFAAEK SDTSLTVKDG YQWRKYGQKI TRDNPSPRAY  60
   61 FRCSFSPSCL VKKKVQRSAE DPSFLVATYE GTHNHTGPHA SVSRTVKLDL VQGGLEPVEE 120
  121 KKERGTIQEV LVQQMASSLT KDPKFTAALA TAISGRLIEH SRT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.0
Match: 1wj2A
Description: Solution Structure of the C-terminal WRKY Domain of AtWRKY4
Matching Structure (courtesy of the PDB):

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